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LC483177.1__BBK09375.1__X__00261
Bact-VirLC483177.1__BBK09375.1__X__00261
Identity
- Accession:
- LC483177 ↗
- Kingdom:
- phage
Quality
69.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-45
Domain cluster:
representative
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5akpA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.76 | 66.0 | 4.59e-01 | 100.0% | 69.0% |
| 4xpmB00 | 3.40.1840.10 | Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like | 0.74 | 63.0 | 5.35e-01 | 100.0% | 91.0% |
| 1ztuA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.73 | 61.0 | 4.14e-01 | 100.0% | 56.3% |
| 2iz4A01 | 2.10.70.10 | Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 | 0.73 | 61.0 | 5.77e-01 | 100.0% | 98.0% |
| 4uriA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.72 | 60.0 | 5.32e-01 | 97.4% | 98.3% |
| 3ttcA03 | 3.30.420.360 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.71 | 61.0 | 4.34e-01 | 100.0% | 36.4% |
| 4mnkA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.71 | 59.0 | 5.09e-01 | 97.4% | 98.5% |
| 3ottA01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.70 | 61.0 | 3.60e-01 | 100.0% | 98.3% |
| 2g3mA04 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.68 | 45.0 | 3.55e-01 | 74.4% | 30.3% |
| 3u6xS00 | 2.60.40.3320 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.68 | 58.0 | 4.30e-01 | 100.0% | 71.4% |
| 3a2kA03 | 3.30.465.60 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.68 | 56.0 | 4.50e-01 | 100.0% | 89.5% |
| 2jpiA00 | 3.30.310.50 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain | 0.66 | 56.0 | 4.26e-01 | 100.0% | 58.3% |
| 1vu2300 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.65 | 56.0 | 3.92e-01 | 100.0% | 60.6% |
| 3tfmA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.64 | 56.0 | 4.04e-01 | 100.0% | 66.1% |
| 2rghA02 | 3.30.9.10 | Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 | 0.64 | 51.0 | 3.51e-01 | 100.0% | 25.2% |
| 1xhhA00 | 2.60.40.1900 | Mainly Beta › Sandwich › Immunoglobulin-like › Beta-microseminoprotein (PSP94) domain | 0.63 | 52.0 | 4.12e-01 | 100.0% | 52.7% |
| 2zxdA02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.62 | 50.0 | 3.91e-01 | 100.0% | 40.7% |
| 2dy3D01 | 2.40.37.10 | Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › Lyase, Ornithine Decarboxylase; Chain A, domain 1 | 0.62 | 47.0 | 3.59e-01 | 100.0% | 36.6% |
| 2w42B02 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.62 | 49.0 | 3.14e-01 | 100.0% | 17.7% |
| 4fflA02 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.62 | 52.0 | 3.18e-01 | 100.0% | 18.5% |
| 2f68X01 | 2.60.40.1280 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.62 | 51.0 | 3.59e-01 | 100.0% | 32.6% |
| 7qu8A01 | 2.60.220.50 | Mainly Beta › Sandwich › Chondroitinase Ac; Chain A, domain 3 › | 0.61 | 52.0 | 3.31e-01 | 100.0% | 23.6% |
| 2la7A01 | 2.40.128.270 | Mainly Beta › Beta Barrel › Lipocalin › | 0.61 | 50.0 | 3.60e-01 | 100.0% | 87.5% |
| 1kfwA02 | 3.10.50.10 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.61 | 49.0 | 4.38e-01 | 100.0% | 98.4% |
| 2dazA01 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.58 | 48.0 | 3.54e-01 | 100.0% | 72.3% |
| 3kg5A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.57 | 47.0 | 3.58e-01 | 100.0% | 47.6% |
| 4b60A01 | 2.60.40.1280 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.56 | 42.0 | 3.11e-01 | 100.0% | 32.9% |
| 2kbsA00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.56 | 45.0 | 3.57e-01 | 100.0% | 90.2% |
| 1r89A02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.56 | 47.0 | 3.32e-01 | 100.0% | 54.7% |
| 2crvA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.55 | 47.0 | 3.58e-01 | 100.0% | 98.9% |
| 2v3aA03 | 3.30.390.120 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › | 0.53 | 45.0 | 3.87e-01 | 100.0% | 65.6% |
| 3frnA01 | 3.10.129.70 | Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › | 0.53 | 41.0 | 2.99e-01 | 100.0% | 29.5% |
| 6ncyA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 39.0 | 3.31e-01 | 100.0% | 43.3% |
| 2q7nA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 39.0 | 3.34e-01 | 100.0% | 46.9% |
| 4mjgA00 | 3.30.2030.30 | Alpha Beta › 2-Layer Sandwich › TBP-like › | 0.51 | 36.0 | 2.64e-01 | 100.0% | 37.9% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3787201 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.76 | 67.0 | 4.95e-01 | 100.0% | 76.5% |
| 5035119 | 331.16.1.1 ↗ | a+b two layers › TBP-like › TA0095-like › TA0095-like › DUF5611 | 0.75 | 60.0 | 4.76e-01 | 97.4% | 61.1% |
| 3902817 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.74 | 62.0 | 3.63e-01 | 100.0% | 97.8% |
| 4086531 | 2003.1.2.16 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 | 0.74 | 64.0 | 3.61e-01 | 100.0% | 8.9% |
| 3587781 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.73 | 64.0 | 4.39e-01 | 100.0% | 48.1% |
| None | — | 0.73 | 64.0 | 3.61e-01 | 100.0% | 11.5% | |
| 4554582 | 3018.1.1.1 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › TilS | 0.73 | 60.0 | 4.74e-01 | 100.0% | 85.6% |
| 4287928 | 3018.1.1.0 ↗ | a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like | 0.73 | 60.0 | 4.71e-01 | 100.0% | 85.6% |
| 3245986 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.72 | 62.0 | 3.82e-01 | 100.0% | 25.2% |
| 4545937 | 5.1.4.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 | 0.72 | 61.0 | 3.48e-01 | 100.0% | 93.5% |
| 4944879 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.71 | 62.0 | 4.82e-01 | 100.0% | 87.1% |
| 3576362 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.70 | 58.0 | 4.47e-01 | 100.0% | 39.0% |
| 3409245 | 223.2.1.36 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_3 | 0.70 | 58.0 | 4.44e-01 | 100.0% | 75.0% |
| 3229983 | 2484.1.1.200 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH | 0.70 | 58.0 | 3.67e-01 | 100.0% | 22.7% |
| 3583765 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.69 | 58.0 | 3.25e-01 | 100.0% | 7.6% |
| 3241422 | 3755.3.1.627 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › CNH | 0.68 | 58.0 | 3.27e-01 | 100.0% | 59.2% |
| 3732045 | 4121.1.1.0 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like | 0.68 | 55.0 | 3.44e-01 | 100.0% | 18.0% |
| 4020162 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.68 | 57.0 | 3.26e-01 | 100.0% | 9.9% |
| 4961531 | 881.4.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB | 0.68 | 57.0 | 4.19e-01 | 100.0% | 46.4% |
| 4028315 | 223.2.1.5 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 | 0.67 | 54.0 | 4.10e-01 | 100.0% | 75.5% |
| 4646590 | 1164.1.1.0 ↗ | a+b two layers › Hypothetical virulence protein › Hypothetical virulence protein › Hypothetical virulence protein | 0.67 | 57.0 | 4.10e-01 | 100.0% | 32.5% |
| 157829 | 244.1.1.4 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › DAO | 0.66 | 54.0 | 4.26e-01 | 100.0% | 42.4% |
| 3222321 | 207.1.1.81 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH | 0.66 | 55.0 | 3.39e-01 | 100.0% | 20.4% |
| 3980339 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.65 | 56.0 | 3.37e-01 | 100.0% | 16.1% |
| 3282163 | 2003.1.2.15 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 | 0.65 | 53.0 | 3.11e-01 | 100.0% | 10.9% |
| 5051533 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.65 | 55.0 | 4.05e-01 | 100.0% | 68.2% |
| 1787989 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.65 | 54.0 | 4.05e-01 | 100.0% | 40.7% |
| 3189018 | 898.1.1.1 ↗ | a+b two layers › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › Ribosomal_L1 | 0.64 | 50.0 | 3.55e-01 | 100.0% | 28.7% |
| 3783073 | 898.1.1.1 ↗ | a+b two layers › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › Ribosomal_L1 | 0.63 | 48.0 | 3.79e-01 | 100.0% | 38.1% |
| 1843010 | 331.19.1.1 ↗ | a+b two layers › TBP-like › Toxin RnlA N-terminal domains › Toxin RnlA N-terminal domains › RnlA_toxin | 0.63 | 50.0 | 4.17e-01 | 100.0% | 81.2% |
| 3804566 | 898.1.1.1 ↗ | a+b two layers › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › Ribosomal_L1 | 0.63 | 49.0 | 3.61e-01 | 100.0% | 30.0% |
| 3790530 | 223.2.1.36 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_3 | 0.62 | 50.0 | 3.72e-01 | 100.0% | 65.0% |
| 3577311 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.62 | 51.0 | 3.92e-01 | 100.0% | 43.0% |
| 3627061 | 7.1.1.1 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ | 0.61 | 51.0 | 3.76e-01 | 100.0% | 70.4% |
| 3264857 | 207.2.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like | 0.60 | 48.0 | 2.74e-01 | 100.0% | 8.3% |
| 3738776 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.60 | 50.0 | 3.51e-01 | 100.0% | 67.9% |
| 4261091 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.60 | 47.0 | 3.45e-01 | 100.0% | 62.8% |
| 5058249 | 898.1.1.1 ↗ | a+b two layers › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › a+b domain in Ribosomal protein L1 › Ribosomal_L1 | 0.59 | 45.0 | 3.51e-01 | 100.0% | 37.7% |
| 4168266 | 270.1.1.2 ↗ | beta barrels › FMT C-terminal domain-like › FMT C-terminal domain-related › FMT C-terminal domain-related › Formyl_trans_C | 0.57 | 41.0 | 3.29e-01 | 100.0% | 33.6% |
| 1806777 | 12.1.1.53 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Alpha-amylase_C_2 | 0.55 | 41.0 | 3.45e-01 | 94.9% | 41.2% |
| 4036034 | 2003.1.2.99 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, FAD_binding_3 | 0.55 | 40.0 | 2.43e-01 | 100.0% | 9.9% |
| 3693595 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.55 | 41.0 | 2.88e-01 | 100.0% | 23.9% |
| None | — | 0.54 | 41.0 | 2.56e-01 | 100.0% | 14.7% | |
| 2321103 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.54 | 41.0 | 3.24e-01 | 100.0% | 38.2% |
| 4491683 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.54 | 40.0 | 3.12e-01 | 100.0% | 33.3% |
| 185264 | 222.1.1.19 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › FlgA_HD-like | 0.53 | 41.0 | 3.64e-01 | 100.0% | 59.4% |