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LC487410.1__BBL19217.1__KIT04_048__00048

Bact-Vir

LC487410.1__BBL19217.1__KIT04_048__00048

Identity

Accession:
LC487410 ↗
Kingdom:
phage

Quality

71.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Demerecviridae› Vibrio_phage_KIT04

TaxID: 2508207

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-74
PDB
Domain cluster: rep: CP000625.2__ABO60841.1__BPSphi6442_0037__00036__D2-62
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1yhpA01 2.60.20.10 Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins 0.58 42.0 3.90e-01 75.7% 89.1%
1tq5A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 41.0 3.65e-01 78.4% 57.4%
3aclA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 41.0 3.59e-01 81.1% 86.4%
1pmiA03 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 40.0 3.42e-01 77.0% 83.2%
2vqaA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 42.0 3.28e-01 86.5% 75.1%
2oa2A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 40.0 3.42e-01 81.1% 57.9%
3n6yA01 2.60.40.2390 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 39.0 3.45e-01 79.7% 80.4%
1tme300 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.51 45.0 3.20e-01 100.0% 75.7%
5by5A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 38.0 3.33e-01 81.1% 56.5%
3up6A02 2.60.40.3380 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 41.0 3.21e-01 87.8% 91.7%
2xlgA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 36.0 2.70e-01 78.4% 77.3%
4i3gA04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.50 36.0 3.14e-01 75.7% 81.6%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3976776 3529.1.1.0 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.85 46.0 6.04e-01 70.3% 100.0%
376763 3529.1.1.2 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Vault_2 0.64 43.0 4.99e-01 70.3% 100.0%
3689997 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 41.0 3.38e-01 71.6% 73.6%
3906596 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 28.0 2.16e-01 83.8% 19.4%
5073275 10.12.1.39 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_2 0.60 43.0 3.87e-01 77.0% 87.6%
3600188 3529.1.1.0 ↗ beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.58 40.0 4.44e-01 71.6% 96.4%
5039933 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.55 43.0 3.78e-01 85.1% 100.0%
3472656 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.55 46.0 4.02e-01 94.6% 61.8%
4940252 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 37.0 3.19e-01 71.6% 75.2%
3592726 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 38.0 3.24e-01 71.6% 86.1%
5028382 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 37.0 3.22e-01 71.6% 79.7%
5067430 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.54 37.0 3.30e-01 71.6% 82.9%
4937249 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 39.0 3.20e-01 78.4% 97.9%
3896234 11.1.1.795 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › FANCAA 0.53 37.0 2.83e-01 71.6% 56.4%
4002700 10.32.1.213 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF25883 0.52 37.0 3.28e-01 74.3% 100.0%
3228983 10.32.1.213 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF25883 0.52 36.0 3.21e-01 70.3% 100.0%
3803567 10.32.1.28 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Sad1_UNC 0.52 44.0 3.23e-01 95.9% 94.8%
4244782 10.2.1.55 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › NPL 0.51 41.0 3.48e-01 87.8% 86.4%
4926801 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 35.0 2.89e-01 71.6% 71.1%
3623050 10.32.1.213 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF25883 0.50 34.0 3.02e-01 70.3% 93.0%
3243461 11.1.1.378 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Rgp1 0.50 41.0 3.21e-01 93.2% 76.5%
4013443 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 41.0 3.33e-01 93.2% 92.0%
D2 medium residues 328-421
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3rx6A00 1.20.58.1090 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phage polarity suppression protein monomer 0.65 53.0 4.24e-01 87.2% 49.7%