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LC541428.1__BCD56371.1__X__00059

Bact-Vir

LC541428.1__BCD56371.1__X__00059

Identity

Accession:
LC541428 ↗
Kingdom:
phage

Quality

83.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 37-106
PDB
Domain cluster: representative
CATH (58)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3wlvA00 3.10.270.10 Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; 0.67 53.0 3.48e-01 87.1% 37.3%
5da9A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.66 54.0 3.48e-01 91.4% 25.9%
2w59B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 44.0 3.80e-01 70.0% 71.1%
3cygA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.65 46.0 3.85e-01 74.3% 84.9%
5jenA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.65 46.0 3.97e-01 75.7% 83.8%
4e72A01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.64 45.0 3.77e-01 74.3% 80.6%
1ewfA02 3.15.20.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 2 › Bactericidal permeability-increasing protein; domain 2 0.64 55.0 3.75e-01 100.0% 89.1%
3d2lA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.63 47.0 4.91e-01 88.6% 87.3%
2gtlO02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.63 49.0 3.85e-01 87.1% 57.1%
5h4zA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.63 47.0 3.83e-01 80.0% 69.8%
2q2bA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.62 52.0 4.21e-01 95.7% 77.3%
7b9cA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 52.0 3.34e-01 98.6% 65.7%
3eyrA00 3.15.10.40 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Uncharacterised protein PF07273 family, DUF1439 0.61 52.0 4.00e-01 100.0% 92.3%
3s5tA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.60 42.0 3.36e-01 75.7% 83.0%
2b3rA00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.59 43.0 3.59e-01 77.1% 73.4%
2cm5A00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.59 43.0 3.44e-01 77.1% 69.2%
4jf8A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.59 49.0 4.05e-01 100.0% 84.7%
2cc3A00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.59 49.0 4.02e-01 98.6% 76.4%
3e99A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 48.0 3.93e-01 98.6% 83.8%
7c5yA02 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 49.0 3.87e-01 97.1% 93.5%
4o3vA00 3.10.450.230 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › VirB8 protein 0.58 49.0 4.04e-01 100.0% 82.6%
1ffvB02 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.57 46.0 3.67e-01 88.6% 46.9%
3gp6A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.56 47.0 3.77e-01 98.6% 49.7%
1ylxA00 3.30.70.1480 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like 0.56 40.0 3.70e-01 87.1% 55.6%
3akoC00 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.56 48.0 3.84e-01 100.0% 53.0%
6a5gA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 41.0 3.38e-01 80.0% 44.1%
3hx8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 47.0 3.95e-01 98.6% 88.3%
3ef8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 46.0 3.76e-01 98.6% 78.4%
3f6gA02 3.30.160.340 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 39.0 4.03e-01 75.7% 88.9%
3ebyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 45.0 3.64e-01 97.1% 83.7%
4amwA01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.55 43.0 2.87e-01 88.6% 89.6%
2nlkA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.54 41.0 2.87e-01 85.7% 26.5%
1ut7B01 2.170.150.80 Mainly Beta › Beta Complex › Metal Binding Protein, Guanine Nucleotide Exchange Factor; Chain A › NAC domain 0.54 43.0 3.62e-01 88.6% 49.6%
2oq8A00 2.60.40.2930 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 46.0 3.66e-01 97.1% 68.7%
1uypA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 43.0 3.00e-01 95.7% 41.7%
2bmoB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 41.0 3.04e-01 84.3% 35.1%
4ikbA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 39.0 3.31e-01 81.4% 89.1%
3obaA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 41.0 3.44e-01 85.7% 67.5%
4h61A00 3.10.450.580 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Mediator complex, subunit Med6 0.53 45.0 3.68e-01 98.6% 51.1%
5cxoB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 43.0 3.63e-01 97.1% 81.3%
6ro0D00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 41.0 3.63e-01 88.6% 75.5%
2f86B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.53 44.0 3.74e-01 100.0% 89.9%
2nq3A00 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.52 44.0 3.71e-01 100.0% 100.0%
1t17A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 37.0 3.06e-01 91.4% 37.2%
2ia7A00 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 43.0 3.79e-01 98.6% 61.3%
3rgaA01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 42.0 3.58e-01 97.1% 82.7%
1ar0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 42.0 3.66e-01 98.6% 86.4%
2lyxA00 3.10.450.390 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Protein of unknown function DUF3889 0.52 41.0 3.90e-01 91.4% 98.9%
2qiyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 43.0 3.61e-01 98.6% 90.3%
3q90B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 41.0 3.55e-01 95.7% 84.6%
1ue6D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 37.0 3.37e-01 80.0% 76.0%
3sreA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.51 42.0 2.85e-01 98.6% 49.2%
4o8sA01 3.10.450.620 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › JHP933, nucleotidyltransferase-like core domain 0.51 37.0 3.14e-01 87.1% 44.0%
2hqlA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 35.0 3.35e-01 75.7% 83.5%
3ebtA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 41.0 3.52e-01 97.1% 85.5%
3ff0A01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 41.0 3.42e-01 95.7% 83.0%
2hgsA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.50 38.0 3.39e-01 85.7% 83.8%
2jq5A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 41.0 3.51e-01 98.6% 73.4%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4033340 3386.1.1.0 beta sandwiches › gp9 C-terminal domain-like › gp9 C-terminal domain-related › gp9 C-terminal domain-related 0.91 84.0 6.98e-01 100.0% 61.1%
3390634 243.1.1.41 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Coa1 0.73 52.0 4.67e-01 82.9% 54.7%
4226755 2004.1.1.782 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23, AAA_29, SbcC_Walker_B 0.71 57.0 3.49e-01 90.0% 15.5%
5036054 2004.1.1.198 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.68 57.0 3.40e-01 90.0% 15.9%
4126991 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.68 49.0 4.55e-01 82.9% 60.0%
3248518 243.1.1.12 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TIM21 0.67 51.0 4.24e-01 81.4% 87.8%
3729448 868.1.1.10 a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › DUF7905 0.66 55.0 3.50e-01 92.9% 51.7%
5055003 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 52.0 4.64e-01 98.6% 59.6%
3929593 883.1.1.2 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C 0.65 55.0 3.84e-01 100.0% 67.3%
3433410 5.1.3.144 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.65 52.0 3.46e-01 90.0% 27.8%
3682129 5.1.3.68 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1618 0.65 53.0 3.38e-01 91.4% 29.4%
3593049 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.64 54.0 3.83e-01 92.9% 73.3%
4928436 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.63 46.0 3.65e-01 78.6% 59.3%
3617556 5.1.4.16 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.61 51.0 3.26e-01 97.1% 62.7%
3270456 331.3.1.17 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.61 53.0 3.90e-01 100.0% 83.1%
3585387 5.1.4.16 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.60 50.0 3.49e-01 95.7% 73.4%
4954883 2003.1.5.82 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_31 0.60 48.0 3.26e-01 88.6% 33.2%
3299054 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 51.0 3.24e-01 97.1% 61.8%
4527282 5.1.4.16 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.59 50.0 3.18e-01 97.1% 58.2%
3608988 241.4.1.0 a+b two layers › Type III secretory system chaperone-like › Hypothetical protein c14orf129, hspc210 › Hypothetical protein c14orf129, hspc210 0.59 41.0 3.77e-01 74.3% 78.9%
3216011 243.1.1.109 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF5382, DUF5382_C 0.58 47.0 3.16e-01 91.4% 72.9%
3853920 883.1.1.2 a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C 0.58 50.0 3.51e-01 100.0% 68.8%
4946189 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.58 42.0 4.05e-01 85.7% 65.9%
3863141 11.2.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.58 43.0 2.93e-01 81.4% 32.6%
3914459 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.58 43.0 3.52e-01 81.4% 66.4%
3950922 243.1.1.80 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26580 0.58 49.0 4.19e-01 98.6% 85.0%
5057162 504.1.1.0 a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB 0.58 39.0 3.31e-01 71.4% 64.0%
4676174 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.58 43.0 3.35e-01 81.4% 68.8%
4481016 243.1.1.6 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › VirB8 0.56 46.0 3.87e-01 98.6% 77.9%
4942841 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.56 47.0 4.13e-01 98.6% 68.7%
3435849 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.56 44.0 4.08e-01 84.3% 69.3%
3262201 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.56 45.0 3.73e-01 95.7% 75.2%
3969155 283.2.1.1 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › GPW_gp25 0.56 41.0 3.33e-01 84.3% 37.4%
3495848 5.1.4.12 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.56 46.0 2.86e-01 97.1% 93.5%
4074364 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.55 45.0 3.78e-01 97.1% 50.8%
3715923 5.1.3.28 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 0.55 47.0 2.96e-01 100.0% 38.3%
3685395 243.1.1.10 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL 0.55 46.0 3.86e-01 97.1% 83.1%
3732444 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.55 45.0 3.72e-01 97.1% 82.1%
3264478 11.1.1.793 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7743 0.55 43.0 3.90e-01 90.0% 62.9%
6380 243.1.1.1 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Ring_hydroxyl_B 0.55 45.0 3.64e-01 97.1% 83.7%
4544843 511.1.1.0 beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain 0.55 45.0 3.83e-01 100.0% 91.1%
3213693 243.1.1.75 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › PF26530 0.54 44.0 3.69e-01 95.7% 87.4%
3223708 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.54 45.0 3.90e-01 98.6% 91.7%
3600143 11.2.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 0.54 43.0 3.51e-01 92.9% 84.0%
4219536 5.1.4.16 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CPSF_A 0.54 44.0 2.88e-01 98.6% 51.1%
4962436 243.1.1.18 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.54 38.0 3.19e-01 75.7% 93.1%
3591282 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.54 41.0 3.56e-01 87.1% 51.3%
3941717 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.53 39.0 3.67e-01 84.3% 63.6%
2632043 243.1.1.26 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_4 0.53 44.0 3.65e-01 100.0% 82.1%
3450141 283.2.1.8 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like › PF29994 0.53 43.0 4.00e-01 100.0% 88.0%
3743138 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.53 42.0 3.72e-01 94.3% 87.8%
3169231 243.1.1.2 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › NTF2 0.53 44.0 3.61e-01 100.0% 87.6%
3600301 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.52 43.0 3.69e-01 97.1% 90.4%
3808998 331.3.1.28 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › DUF220 0.52 42.0 3.16e-01 97.1% 66.8%
3483288 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 42.0 3.57e-01 100.0% 63.8%
3183677 523.1.1.3 a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › PF29994 0.50 41.0 3.70e-01 100.0% 77.3%