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LC545443.1__BCD83051.1__NrS2_01__00001

Bact-Vir

LC545443.1__BCD83051.1__NrS2_01__00001

Identity

Accession:
LC545443 ↗
Kingdom:
phage

Quality

89.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Nitratiruptor_phage_NrS-2

TaxID: 2725864

Cluster

View cluster (35 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-52
PDB
Domain cluster: rep: IMGVR_UViG_3300021488_000008-3300021488-Ga0190305_100017515__D2-53
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF12167.15 best Arm-DNA-bind_2 29.7 7.20e-07 82.0% 58.5%
CATH (70)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xa7M01 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.75 58.0 4.41e-01 100.0% 35.8%
6yiiA01 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.73 59.0 3.83e-01 92.0% 40.2%
4p6zM01 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.72 55.0 4.24e-01 100.0% 35.5%
7yh1A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.72 56.0 4.34e-01 100.0% 37.7%
1w63Q00 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.70 53.0 3.89e-01 100.0% 29.1%
2hf6A00 3.30.450.60 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.70 54.0 4.01e-01 100.0% 30.9%
1ifqB00 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.69 52.0 3.96e-01 100.0% 33.6%
2dmwA01 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.69 51.0 4.06e-01 100.0% 37.1%
3zl8A02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.68 51.0 3.38e-01 100.0% 18.6%
1e8cA02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.68 57.0 3.65e-01 100.0% 19.7%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 47.0 4.48e-01 94.0% 60.7%
2m89A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.67 52.0 3.97e-01 90.0% 95.5%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 43.0 3.97e-01 92.0% 50.8%
3n7cA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 47.0 3.72e-01 76.0% 41.7%
8f5dA05 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.67 57.0 3.67e-01 100.0% 21.7%
3cueC00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.65 48.0 3.58e-01 100.0% 29.4%
3fehA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 50.0 3.75e-01 84.0% 38.7%
6v04A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.65 48.0 3.74e-01 86.0% 97.6%
1skoB00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.64 50.0 3.99e-01 100.0% 39.7%
6j7xC01 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.64 49.0 3.67e-01 100.0% 31.4%
2hhiA01 3.30.565.40 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Fervidobacterium nodosum Rt17-B1 like 0.63 52.0 4.08e-01 98.0% 41.5%
2j3tD01 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.63 51.0 3.85e-01 96.0% 36.6%
4c12A02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.63 50.0 3.30e-01 100.0% 19.7%
3oh8A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.63 47.0 3.58e-01 88.0% 96.4%
2ldkA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.63 51.0 3.67e-01 100.0% 86.0%
1ebdA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.62 40.0 3.09e-01 84.0% 25.6%
2j3tC00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.62 45.0 3.41e-01 100.0% 29.8%
3kyeA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.61 49.0 3.90e-01 100.0% 41.2%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.61 43.0 3.38e-01 76.0% 63.7%
2qmiA02 2.40.128.210 Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain 0.61 48.0 3.91e-01 90.0% 65.0%
2ivdB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.61 44.0 3.12e-01 78.0% 48.8%
1azpA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 41.0 3.80e-01 76.0% 54.5%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 47.0 3.68e-01 92.0% 40.5%
1fr3A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.60 46.0 4.20e-01 96.0% 62.7%
4d10F01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.60 43.0 3.06e-01 82.0% 29.1%
3io5A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.60 46.0 2.99e-01 92.0% 17.3%
2zbcA01 3.30.70.920 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain 0.59 44.0 4.00e-01 86.0% 90.4%
1h8mA00 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.59 48.0 3.64e-01 100.0% 40.0%
2ltrA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.58 47.0 3.89e-01 100.0% 47.6%
4epcA02 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.58 34.0 3.10e-01 86.0% 40.8%
1aqcB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 43.0 3.38e-01 84.0% 35.2%
1s7iA00 3.30.70.1060 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Dimeric alpha+beta barrel 0.56 43.0 3.32e-01 86.0% 83.9%
1kyfA01 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.56 49.0 3.61e-01 100.0% 66.4%
4l5rC02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 42.0 3.60e-01 84.0% 74.2%
3nm6B00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.56 45.0 3.08e-01 100.0% 94.8%
4qdiA02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.55 44.0 2.97e-01 96.0% 22.3%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.55 41.0 3.69e-01 86.0% 56.6%
1t6aA02 3.30.310.120 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Rbstp2229 like protein 0.55 42.0 3.75e-01 88.0% 73.1%
5zg8A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 43.0 3.52e-01 92.0% 70.6%
1g29102 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 38.0 3.95e-01 96.0% 84.4%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 36.0 3.52e-01 84.0% 59.6%
4ghnA02 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.54 45.0 3.65e-01 100.0% 83.8%
2m47A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 39.0 2.97e-01 90.0% 93.3%
5agvA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.53 41.0 3.13e-01 88.0% 34.7%
4l2iB00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.53 46.0 2.91e-01 100.0% 39.5%
1kxlA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 42.0 2.86e-01 90.0% 87.2%
3dtdD00 2.60.40.1880 Mainly Beta › Sandwich › Immunoglobulin-like › Invasion associated locus B (IalB) protein 0.53 36.0 2.59e-01 70.0% 24.1%
4ntqB00 3.30.2450.20 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.53 41.0 3.11e-01 94.0% 38.6%
6c1zA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 42.0 3.21e-01 96.0% 64.5%
2nn5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.52 43.0 3.12e-01 100.0% 69.6%
4joiA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 42.0 3.23e-01 100.0% 56.0%
1l0wA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 42.0 3.37e-01 94.0% 70.8%
1h0hB01 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 39.0 2.97e-01 92.0% 78.7%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.51 38.0 2.53e-01 84.0% 36.1%
3rn5A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 40.0 3.43e-01 94.0% 71.7%
1z2aA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 41.0 3.03e-01 100.0% 97.0%
4bfiB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 42.0 3.58e-01 100.0% 83.3%
2qm4A01 2.170.210.10 Mainly Beta › Beta Complex › Dna Repair Protein Xrcc4; Chain: A, domain 1 › DNA double-strand break repair and VJ recombination XRCC4, N-terminal 0.50 39.0 3.02e-01 96.0% 51.0%
2czrA02 3.90.79.30 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › TBP-interacting protein, C-terminal domain 0.50 36.0 2.92e-01 84.0% 52.5%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 42.0 3.66e-01 100.0% 63.9%
ECOD (91)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3979711 252.2.1.6 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_2 0.88 80.0 7.31e-01 100.0% 76.9%
4056117 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.76 51.0 4.75e-01 76.0% 55.4%
3783241 223.2.1.3 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s 0.75 57.0 4.15e-01 100.0% 29.7%
3711364 223.2.1.3 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s 0.74 57.0 4.11e-01 100.0% 28.7%
3364335 223.2.1.3 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s 0.74 56.0 3.97e-01 100.0% 26.1%
5068533 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.73 55.0 4.14e-01 100.0% 32.3%
5051142 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.73 55.0 3.98e-01 100.0% 29.0%
5074455 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.72 55.0 4.36e-01 100.0% 39.1%
3882038 223.2.1.3 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s 0.72 55.0 3.94e-01 100.0% 27.7%
3325708 109.4.1.1254 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, PPR_2, E_motif 0.72 43.0 2.59e-01 92.0% 10.2%
3742622 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.72 54.0 3.99e-01 100.0% 29.7%
3927766 223.2.1.3 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s 0.72 54.0 3.99e-01 100.0% 29.7%
5047389 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.72 53.0 3.97e-01 100.0% 31.5%
4978955 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.71 53.0 4.04e-01 100.0% 32.3%
3251755 223.2.1.3 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s 0.71 54.0 3.84e-01 100.0% 26.1%
5071005 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.71 53.0 4.02e-01 100.0% 32.3%
5049349 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.71 53.0 3.81e-01 100.0% 27.1%
3169378 223.2.1.3 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s 0.70 53.0 3.98e-01 100.0% 31.9%
4979658 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.70 53.0 3.85e-01 100.0% 28.7%
4978002 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.70 52.0 3.78e-01 100.0% 28.0%
5047050 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.70 55.0 4.35e-01 100.0% 40.9%
5076118 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.70 53.0 3.90e-01 100.0% 29.7%
4979823 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.69 53.0 4.39e-01 100.0% 45.0%
5076907 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.69 59.0 4.36e-01 100.0% 39.3%
5046999 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.68 50.0 3.76e-01 100.0% 30.6%
5049763 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.68 51.0 3.82e-01 100.0% 30.7%
5064298 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.67 57.0 4.45e-01 100.0% 43.5%
4978284 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.67 51.0 3.94e-01 100.0% 35.8%
5038289 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.67 50.0 3.77e-01 100.0% 31.1%
5076535 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.67 50.0 3.83e-01 100.0% 33.1%
4027687 330.3.1.0 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.67 56.0 5.46e-01 98.0% 92.7%
4944878 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.67 50.0 3.83e-01 100.0% 33.1%
3164102 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.67 50.0 5.20e-01 100.0% 95.6%
3495619 220.1.1.22 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › FERM_C 0.67 51.0 4.02e-01 86.0% 42.7%
5000609 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.67 54.0 4.20e-01 98.0% 41.6%
4999058 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.66 48.0 4.04e-01 96.0% 43.2%
4978622 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.66 56.0 4.56e-01 100.0% 53.0%
3281830 223.2.1.5 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.65 55.0 4.16e-01 100.0% 40.0%
3701193 223.2.1.8 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Sybindin 0.65 49.0 3.68e-01 100.0% 30.6%
4946422 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 54.0 4.02e-01 98.0% 36.4%
3620870 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 54.0 4.44e-01 100.0% 52.0%
3954390 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.64 49.0 3.61e-01 86.0% 94.6%
5076956 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 48.0 3.73e-01 100.0% 34.4%
3735541 223.2.1.8 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Sybindin 0.64 52.0 3.64e-01 96.0% 28.3%
4944469 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 54.0 4.08e-01 100.0% 41.5%
5013176 4100.1.1.0 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.64 50.0 4.54e-01 100.0% 62.7%
3270265 223.2.1.20 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_1 0.64 47.0 3.62e-01 100.0% 31.9%
3808328 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 47.0 3.69e-01 100.0% 34.4%
4027686 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.64 52.0 5.17e-01 98.0% 92.7%
4944816 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 52.0 3.95e-01 100.0% 36.9%
3386077 2.4.1.0 ↗ beta barrels › OB-fold › MOP-like › MOP-like 0.64 46.0 4.84e-01 96.0% 88.9%
3931122 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 49.0 4.00e-01 84.0% 47.4%
4003988 391.1.1.7 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 0.63 40.0 3.55e-01 70.0% 42.7%
5068380 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 47.0 3.59e-01 100.0% 32.3%
5072591 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 52.0 4.13e-01 100.0% 46.1%
5074649 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 51.0 3.98e-01 98.0% 41.6%
4946665 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.63 46.0 3.54e-01 100.0% 30.7%
4994830 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.63 45.0 3.48e-01 94.0% 33.0%
4980097 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 50.0 3.93e-01 98.0% 41.6%
3460642 223.2.1.8 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Sybindin 0.62 52.0 3.86e-01 100.0% 95.1%
4450167 2004.1.1.159 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.62 50.0 3.27e-01 96.0% 20.0%
5032395 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 51.0 3.93e-01 100.0% 39.2%
4973804 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 48.0 4.27e-01 90.0% 57.3%
4947665 223.2.1.58 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Arf 0.62 45.0 3.62e-01 100.0% 35.8%
3624010 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.61 42.0 4.21e-01 78.0% 72.0%
3243753 223.2.1.8 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Sybindin 0.61 48.0 3.66e-01 96.0% 35.7%
5049789 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 50.0 3.82e-01 96.0% 40.8%
5051009 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 47.0 3.60e-01 96.0% 33.6%
5050909 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 49.0 3.76e-01 98.0% 36.9%
3681410 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.61 42.0 3.49e-01 82.0% 38.9%
5071762 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 46.0 3.61e-01 100.0% 36.0%
5046621 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 50.0 3.91e-01 100.0% 40.8%
5045235 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 51.0 3.88e-01 100.0% 39.2%
5075279 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 50.0 3.96e-01 100.0% 46.1%
3341742 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 49.0 3.63e-01 100.0% 32.9%
4977721 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 48.0 3.71e-01 98.0% 39.3%
5053041 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 49.0 3.74e-01 100.0% 37.8%
5051623 223.2.1.20 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_1 0.59 46.0 3.59e-01 96.0% 36.2%
5044631 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 48.0 3.71e-01 100.0% 92.3%
4947707 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 48.0 3.73e-01 100.0% 38.5%
3834262 223.2.1.15 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Longin 0.58 46.0 3.53e-01 100.0% 35.0%
4432580 2011.2.1.3 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › Pept_tRNA_hydro 0.57 44.0 3.13e-01 92.0% 84.6%
4390303 5.1.3.238 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PF29568 0.57 46.0 2.63e-01 96.0% 11.1%
4183868 878.1.1.1 ↗ a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.57 44.0 3.88e-01 88.0% 58.2%
3919854 223.2.1.33 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_3 0.57 41.0 2.99e-01 80.0% 49.3%
3249305 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 43.0 3.62e-01 94.0% 44.8%
3680994 109.4.1.1269 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, E_motif 0.56 38.0 2.36e-01 78.0% 10.5%
4932470 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.56 46.0 3.83e-01 94.0% 80.0%
4619750 2004.1.1.159 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mur_ligase_M 0.54 42.0 2.79e-01 96.0% 20.4%
5045968 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.52 42.0 2.46e-01 92.0% 35.9%
4524594 387.1.1.0 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › omega toxin-related 0.50 35.0 3.32e-01 74.0% 79.7%
D2 high residues 60-136
PDB
Domain cluster: rep: IMGVR_UViG_3300021488_000008-3300021488-Ga0190305_100017515__D59-140
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kobA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.90 84.0 7.81e-01 100.0% 86.0%
2kiwA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.80 72.0 6.95e-01 100.0% 94.2%
2a3vB01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.75 66.0 6.20e-01 97.4% 86.2%
2py6A01 1.20.1270.160 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.69 39.0 4.05e-01 94.8% 58.9%
4cs9B02 1.20.120.1350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pneumovirus matrix protein 2 (M2), zinc-binding domain 0.68 53.0 4.75e-01 97.4% 59.8%
1t72A02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.68 46.0 4.25e-01 70.1% 85.7%
2qwoB00 1.10.287.110 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain 0.64 47.0 4.50e-01 79.2% 93.5%
2xheA03 3.90.830.10 Alpha Beta › Alpha-Beta Complex › Syntaxin Binding Protein 1; Chain A, domain 2 › Sec1/Munc18 (SM) protein, domain 3a 0.63 55.0 4.79e-01 100.0% 96.7%
1vhnA02 1.10.1200.80 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › Putative flavin oxidoreducatase; domain 2 0.62 34.0 3.53e-01 88.3% 54.9%
2xzmV01 1.10.60.20 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 0.61 45.0 4.87e-01 77.9% 100.0%
2yqdA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.60 52.0 4.58e-01 100.0% 84.2%
5fb0A02 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.60 52.0 4.70e-01 100.0% 77.7%
1f68A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.59 50.0 4.65e-01 100.0% 93.2%
7zxkC01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.58 49.0 3.97e-01 93.5% 67.3%
3qsgA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.58 43.0 3.78e-01 79.2% 89.6%
4jgwA01 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.58 41.0 3.33e-01 76.6% 42.9%
1r4gA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.57 33.0 3.72e-01 89.6% 79.2%
1sumB01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.56 38.0 3.49e-01 71.4% 82.2%
1lq7A00 1.20.1270.70 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle 0.56 40.0 4.24e-01 93.5% 86.6%
2kjgA00 1.20.120.970 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.55 46.0 4.31e-01 97.4% 76.8%
2d3dA00 1.10.150.50 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 0.55 46.0 4.48e-01 96.1% 84.3%
5nl6A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 37.0 3.41e-01 70.1% 78.7%
3f7cA00 1.20.1590.10 Mainly Alpha › Up-down Bundle › YP_001051499.1 fold like › YP_001051499.1 domain like 0.55 46.0 3.46e-01 93.5% 44.2%
3s6jE02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.55 41.0 4.35e-01 100.0% 92.8%
3fblA00 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 45.0 4.50e-01 100.0% 100.0%
2iw3A02 1.20.1390.20 Mainly Alpha › Up-down Bundle › PWI domain › 0.54 46.0 4.48e-01 100.0% 92.2%
4gpkB01 1.25.40.1000 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.53 38.0 3.55e-01 76.6% 86.9%
2kvsA00 1.10.150.260 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › YozE SAM-like 0.52 41.0 4.09e-01 98.7% 87.5%
1nafA02 1.20.58.160 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 42.0 4.08e-01 100.0% 81.2%
1foeA01 1.20.900.10 Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain 0.52 42.0 3.19e-01 92.2% 77.0%
2iazA00 1.20.1500.10 Mainly Alpha › Up-down Bundle › YheA-like fold › YheA/YmcA-like 0.51 40.0 3.58e-01 94.8% 60.2%
7ep3A01 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.51 37.0 2.64e-01 76.6% 36.8%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3165066 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.86 80.0 6.78e-01 100.0% 68.3%
3589750 186.1.1.5 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_3 0.86 80.0 7.09e-01 100.0% 77.1%
4663744 186.1.1.5 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_3 0.86 78.0 6.89e-01 100.0% 72.7%
3984910 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.84 77.0 6.98e-01 100.0% 81.0%
4964250 186.1.1.4 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 0.82 74.0 6.44e-01 100.0% 73.0%
5081699 186.1.1.4 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 0.75 67.0 6.37e-01 98.7% 90.0%
4995419 592.2.1.0 ↗ alpha arrays › PWI domain-like › YugE-like › YugE-like 0.68 60.0 5.85e-01 100.0% 94.1%
3507547 4995.1.1.0 ↗ alpha arrays › Methionine synthase domain-like › Methionine synthase domain-like › Methionine synthase domain-like 0.68 49.0 5.14e-01 76.6% 98.6%
3216679 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.67 54.0 5.48e-01 100.0% 89.3%
5002845 192.8.1.0 ↗ alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain 0.65 46.0 4.02e-01 97.4% 48.3%
4013760 4015.1.1.1 ↗ alpha complex topology › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › Sec1 0.65 57.0 3.97e-01 100.0% 45.8%
None — 0.63 43.0 4.22e-01 71.4% 88.2%
3486029 4015.1.1.1 ↗ alpha complex topology › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › alpha-helical domain in sec1/munc18-like (SM) proteins › Sec1 0.63 54.0 3.87e-01 100.0% 44.4%
3665138 604.3.1.0 ↗ alpha bundles › Spectrin repeat-like › BAG domain › BAG domain 0.63 43.0 3.90e-01 71.4% 71.4%
4020688 610.1.1.0 ↗ alpha arrays › ERP29 C domain-like › ERP29 C domain-like › ERP29 C domain-like 0.60 43.0 4.06e-01 79.2% 60.0%
5060987 5048.1.1.1 ↗ alpha complex topology › Aquaporin-like › Aquaporin-like › Aquaporin-like › MIP 0.57 47.0 3.70e-01 96.1% 67.6%
4961796 606.1.1.0 ↗ alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain 0.56 43.0 4.12e-01 97.4% 71.1%
3605313 4010.1.1.2 ↗ a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_1,RNA_pol_Rpb2_3 0.55 38.0 2.40e-01 96.1% 12.4%
4965784 3455.1.1.17 ↗ alpha arrays › WY-domain in RXLR effectors › WY-domain in RXLR effectors › WY-domain in RXLR effectors › DUF7853 0.55 46.0 4.46e-01 94.8% 100.0%
4446713 604.11.1.1 ↗ alpha bundles › Spectrin repeat-like › XseB-like › XseB-like › Exonuc_VII_S 0.54 39.0 3.96e-01 80.5% 77.3%
4020966 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.54 38.0 3.35e-01 72.7% 51.3%
437307 191.1.1.1 ↗ alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_1 0.53 39.0 3.28e-01 80.5% 53.5%
4929546 6049.1.1.0 ↗ alpha bundles › PH0832-like › PH0832-like › PH0832-like 0.53 41.0 4.22e-01 98.7% 100.0%
4175163 2006.1.1.1 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase 0.53 43.0 3.13e-01 100.0% 31.6%
3992442 592.7.1.1 ↗ alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain › GIPC1_GH2 0.52 42.0 4.16e-01 100.0% 85.9%
3743739 2485.1.1.49 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_12 0.52 40.0 3.22e-01 100.0% 38.3%
3641811 632.7.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.52 44.0 4.26e-01 97.4% 90.0%
5052428 605.6.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › HP1531-like › HP1531-like 0.52 38.0 3.76e-01 96.1% 72.6%
4520559 592.2.1.1 ↗ alpha arrays › PWI domain-like › YugE-like › YugE-like › DUF1871 0.50 42.0 4.17e-01 100.0% 96.5%
3992191 109.4.1.134 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SPIN90_LRD 0.50 34.0 3.17e-01 92.2% 54.0%
D3 high residues 163-286
PDB
Domain cluster: rep: OR521086.1__WNO28498.1__SEA_HIGHBURY_53__00053__D115-230
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00589.28 best Phage_integrase 53.6 3.40e-14 99.2% 67.4%