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LC545443.1__BCD83070.1__NrS2_20__00020
Bact-VirLC545443.1__BCD83070.1__NrS2_20__00020
Identity
- Accession:
- LC545443 ↗
- Kingdom:
- phage
Quality
68.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-70
Domain cluster:
representative
CATH (37)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6ofuA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.79 | 60.0 | 3.90e-01 | 81.2% | 24.7% |
| 1gvfB00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.74 | 57.0 | 3.69e-01 | 82.8% | 34.2% |
| 1ad6A00 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.71 | 50.0 | 3.59e-01 | 75.0% | 25.9% |
| 2bg1A01 | 3.90.1310.40 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › | 0.69 | 47.0 | 4.47e-01 | 71.9% | 68.8% |
| 2ckoA02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.67 | 58.0 | 3.87e-01 | 100.0% | 69.8% |
| 1v9mA03 | 1.20.1690.10 | Mainly Alpha › Up-down Bundle › V-type ATP synthase subunit C fold › V-type ATP synthase subunit C domain | 0.66 | 46.0 | 4.10e-01 | 73.4% | 99.0% |
| 3qxlA00 | 1.10.840.10 | Mainly Alpha › Orthogonal Bundle › Son of Sevenless (SoS) protein; Chain S, domain 2 › Ras guanine-nucleotide exchange factors catalytic domain | 0.66 | 50.0 | 3.40e-01 | 82.8% | 78.0% |
| 2yqyA00 | 1.20.120.450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain | 0.66 | 46.0 | 3.66e-01 | 73.4% | 70.6% |
| 1f5mA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.64 | 52.0 | 3.84e-01 | 98.4% | 33.0% |
| 2mabA00 | 1.10.10.1350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain | 0.63 | 52.0 | 4.47e-01 | 95.3% | 64.2% |
| 4i9oA00 | 1.10.246.20 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain | 0.62 | 44.0 | 4.19e-01 | 76.6% | 66.7% |
| 7wboA01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.62 | 50.0 | 3.62e-01 | 89.1% | 31.7% |
| 7s0rB01 | 1.20.81.20 | Mainly Alpha › Up-down Bundle › Receptor-associated Protein › | 0.62 | 43.0 | 4.11e-01 | 73.4% | 61.8% |
| 3d36B02 | 1.10.287.130 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Signal transduction histidine kinase, dimerisation/phosphotransfer (DHp) domain | 0.60 | 45.0 | 4.66e-01 | 84.4% | 83.6% |
| 2pusA04 | 6.10.140.300 | Special › Helix non-globular › Helix Hairpins › | 0.59 | 42.0 | 3.58e-01 | 75.0% | 46.3% |
| 1f2eA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.59 | 43.0 | 3.59e-01 | 82.8% | 46.2% |
| 1z3iX01 | 3.40.50.10810 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Tandem AAA-ATPase domain | 0.58 | 47.0 | 3.14e-01 | 89.1% | 79.1% |
| 4l0rB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 45.0 | 4.33e-01 | 82.8% | 100.0% |
| 2guzB00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.58 | 44.0 | 4.41e-01 | 95.3% | 81.5% |
| 2yevA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.58 | 42.0 | 4.01e-01 | 78.1% | 66.2% |
| 1go3F02 | 6.10.140.10 | Special › Helix non-globular › Helix Hairpins › | 0.58 | 33.0 | 3.84e-01 | 78.1% | 78.7% |
| 3umbA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.57 | 40.0 | 3.83e-01 | 76.6% | 64.6% |
| 6t0bc01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.57 | 44.0 | 4.13e-01 | 84.4% | 67.9% |
| 2nn4A00 | 1.10.287.760 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like | 0.56 | 42.0 | 4.33e-01 | 96.9% | 83.9% |
| 3l4aA00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.56 | 38.0 | 3.20e-01 | 90.6% | 38.0% |
| 4x28A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.56 | 44.0 | 3.27e-01 | 85.9% | 49.7% |
| 3ermB00 | 1.10.10.710 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PSPTO_1197 like | 0.56 | 38.0 | 3.80e-01 | 71.9% | 71.9% |
| 2kjgA00 | 1.20.120.970 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.55 | 38.0 | 3.43e-01 | 92.2% | 49.5% |
| 3uarA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.55 | 39.0 | 3.38e-01 | 78.1% | 47.7% |
| 4i43B02 | 3.30.43.40 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 › Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain | 0.54 | 44.0 | 3.73e-01 | 98.4% | 51.8% |
| 1qguB04 | 1.20.89.10 | Mainly Alpha › Up-down Bundle › Nitrogenase Molybdenum-iron Protein, subunit B; domain 4 › Nitrogenase Molybdenum-iron Protein, subunit B, domain 4 | 0.53 | 35.0 | 3.23e-01 | 73.4% | 51.8% |
| 4wr4A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.53 | 38.0 | 3.29e-01 | 87.5% | 46.7% |
| 1qv9A02 | 6.10.140.120 | Special › Helix non-globular › Helix Hairpins › | 0.52 | 47.0 | 3.97e-01 | 100.0% | 91.3% |
| 4hr1A00 | 1.20.1270.410 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.52 | 44.0 | 3.63e-01 | 95.3% | 69.5% |
| 2dbhA01 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.51 | 36.0 | 3.38e-01 | 73.4% | 77.2% |
| 4rflA02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.51 | 43.0 | 3.13e-01 | 98.4% | 54.8% |
| 7a8zB01 | 1.10.520.10 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › | 0.51 | 41.0 | 3.67e-01 | 89.1% | 70.3% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3489683 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.83 | 61.0 | 5.82e-01 | 78.1% | 69.3% |
| 3571483 | 60.1.1.16 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › SPOC domain › MTBP_C | 0.82 | 56.0 | 5.17e-01 | 70.3% | 60.8% |
| 3621479 | 6026.1.1.1 ↗ | alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › cwf21 | 0.82 | 58.0 | 5.20e-01 | 73.4% | 61.2% |
| 3378219 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.81 | 56.0 | 4.54e-01 | 71.9% | 50.4% |
| 3950977 | 5058.1.1.9 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Colicin_V | 0.80 | 56.0 | 4.16e-01 | 75.0% | 30.3% |
| 4648753 | 605.1.1.278 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › Attractin | 0.80 | 57.0 | 5.88e-01 | 75.0% | 80.0% |
| 3482882 | 5063.1.1.0 ↗ | alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK | 0.79 | 57.0 | 5.86e-01 | 75.0% | 88.3% |
| 3566658 | 2006.1.4.33 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › Tim17 | 0.78 | 56.0 | 5.31e-01 | 75.0% | 68.0% |
| 3652698 | 213.1.1.72 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1, Acetyltransf_10 | 0.77 | 57.0 | 3.98e-01 | 79.7% | 25.0% |
| 3963947 | 3826.1.1.25 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › GlutR_dimer | 0.75 | 53.0 | 4.98e-01 | 75.0% | 66.3% |
| 3272900 | 109.3.1.176 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2, Ank_3, Ank_4 | 0.74 | 60.0 | 3.74e-01 | 87.5% | 17.6% |
| 3928484 | 605.1.1.14 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › ATP_synt_H | 0.73 | 47.0 | 4.50e-01 | 85.9% | 57.3% |
| 4000626 | 5043.1.1.11 ↗ | extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like › ATP_synt_H | 0.70 | 48.0 | 4.49e-01 | 82.8% | 57.5% |
| 5018474 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.70 | 51.0 | 4.21e-01 | 76.6% | 44.5% |
| 4369880 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.67 | 47.0 | 4.17e-01 | 75.0% | 49.0% |
| 3699903 | 5069.1.3.0 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits | 0.66 | 47.0 | 4.13e-01 | 76.6% | 49.0% |
| 3830182 | 142.1.1.21 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › KIX_2 | 0.64 | 44.0 | 4.20e-01 | 71.9% | 61.3% |
| 3584345 | 375.1.1.26 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 | 0.60 | 43.0 | 3.35e-01 | 85.9% | 35.6% |
| 3969538 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.58 | 46.0 | 4.95e-01 | 89.1% | 98.2% |
| 5001929 | 605.1.1.360 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › DUF6448 | 0.57 | 44.0 | 4.24e-01 | 84.4% | 96.0% |
| 3708255 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.57 | 44.0 | 4.20e-01 | 90.6% | 72.0% |
| 5026895 | 101.1.17.0 ↗ | alpha arrays › HTH › HTH › FF domain | 0.57 | 48.0 | 4.34e-01 | 92.2% | 83.5% |
| 4608698 | 568.1.1.4 ↗ | few secondary structure elements › p8-MTCP1-related › p8-MTCP1-related › p8-MTCP1-related › CHCH | 0.56 | 48.0 | 4.75e-01 | 100.0% | 94.3% |
| 3188064 | 605.1.1.133 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › OST3_OST6 | 0.55 | 48.0 | 3.80e-01 | 93.8% | 76.0% |
| 4280495 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.54 | 38.0 | 2.71e-01 | 100.0% | 21.8% |
| 3615313 | 1128.1.1.2 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR_2 | 0.54 | 45.0 | 4.22e-01 | 98.4% | 77.5% |
| 3811835 | 7076.1.1.0 ↗ | 0.52 | 47.0 | 4.69e-01 | 100.0% | 95.4% | |
| 3463858 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.52 | 45.0 | 3.89e-01 | 98.4% | 78.0% |
| 4953007 | 632.11.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like › DUF357 | 0.51 | 46.0 | 4.37e-01 | 100.0% | 84.0% |