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LC545443.1__BCD83088.1__NrS2_38__00038

Bact-Vir

LC545443.1__BCD83088.1__NrS2_38__00038

Identity

Accession:
LC545443 ↗
Kingdom:
phage

Quality

83.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Nitratiruptor_phage_NrS-2

TaxID: 2725864

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-67
PDB
Domain cluster: representative
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2v1xA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 49.0 4.10e-01 93.8% 40.9%
3ed5A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.71 52.0 4.77e-01 78.1% 94.0%
3nbiA01 1.10.8.1020 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › RecQ-mediated genome instability protein 1, N-terminal domain 0.69 45.0 4.66e-01 96.9% 72.4%
1jcfA03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.67 49.0 4.65e-01 78.1% 100.0%
4uavA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.66 48.0 4.39e-01 78.1% 90.6%
2ky4A01 1.10.3130.20 Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › Phycobilisome linker domain 0.64 47.0 3.68e-01 76.6% 93.1%
3e3vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 34.0 3.74e-01 92.2% 62.3%
2hszA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.64 45.0 4.33e-01 76.6% 92.0%
3feuA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.63 45.0 3.31e-01 76.6% 38.8%
1oohA00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.63 53.0 4.34e-01 96.9% 93.7%
3c1dB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 40.0 4.13e-01 98.4% 67.7%
3ousA00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.62 54.0 5.06e-01 100.0% 79.3%
1x42A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.62 44.0 4.12e-01 78.1% 89.2%
2pyqA00 1.10.238.120 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Jann4075-like 0.61 49.0 4.01e-01 85.9% 84.2%
4gx0A01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.61 53.0 4.58e-01 100.0% 65.0%
3i3vA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.61 50.0 3.49e-01 93.8% 77.4%
3dsbA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.60 46.0 3.92e-01 82.8% 57.4%
1hbkA00 1.20.80.10 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.59 40.0 3.62e-01 71.9% 100.0%
7x0fB01 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.58 49.0 4.75e-01 95.3% 100.0%
3zhiA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.58 43.0 4.24e-01 87.5% 78.1%
1af7A01 1.10.155.10 Mainly Alpha › Orthogonal Bundle › Chemotaxis Receptor Methyltransferase Cher; domain 1 › Chemotaxis receptor methyltransferase CheR, N-terminal domain 0.58 44.0 4.09e-01 81.2% 75.0%
2o5rA04 1.10.8.70 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 0.56 37.0 4.01e-01 78.1% 89.6%
1u5tB02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 36.0 3.55e-01 95.3% 60.9%
1skvA00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.56 34.0 3.48e-01 100.0% 62.5%
2qytA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.53 39.0 3.41e-01 79.7% 59.4%
2yqzA02 1.10.8.900 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.53 48.0 4.70e-01 100.0% 98.5%
1ztdA00 1.10.1520.20 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III 0.53 41.0 3.31e-01 100.0% 43.2%
4nlcA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.53 38.0 2.62e-01 78.1% 59.9%
2fnaA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.52 43.0 4.05e-01 89.1% 80.3%
2z4sA02 1.10.8.60 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.52 43.0 4.17e-01 90.6% 98.6%
3gagA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.50 40.0 2.89e-01 90.6% 61.2%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4957413 101.1.2.244 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_21 0.74 45.0 4.97e-01 90.6% 78.0%
3439564 603.1.1.1 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin 0.69 57.0 4.11e-01 100.0% 31.9%
4078112 592.1.1.1 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain › PWI 0.68 50.0 4.72e-01 79.7% 84.8%
2849648 2006.1.1.18 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.68 59.0 4.03e-01 98.4% 71.3%
3649030 603.1.1.97 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin, SNARE 0.66 59.0 3.86e-01 100.0% 24.8%
3200582 101.1.2.111 ↗ alpha arrays › HTH › HTH › winged helix domain › RQC 0.66 48.0 3.85e-01 93.8% 40.0%
5073536 2006.1.1.18 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.65 57.0 3.96e-01 100.0% 85.3%
3660851 603.1.1.97 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin, SNARE 0.65 57.0 4.04e-01 100.0% 32.2%
4530474 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.65 55.0 5.14e-01 100.0% 76.2%
3206356 304.114.1.0 ↗ a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.64 52.0 3.23e-01 92.2% 23.7%
3239645 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.64 45.0 4.33e-01 98.4% 64.0%
3167747 592.1.1.0 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain 0.64 46.0 4.32e-01 79.7% 81.2%
5067843 101.35.1.0 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.63 37.0 3.98e-01 98.4% 70.0%
3347027 603.1.1.1 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin 0.63 55.0 3.83e-01 100.0% 31.2%
3604537 101.1.2.542 ↗ alpha arrays › HTH › HTH › winged helix domain › ATPase_2 0.61 51.0 4.83e-01 89.1% 84.0%
3487134 592.7.1.0 ↗ alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain 0.60 46.0 4.15e-01 84.4% 76.7%
3646269 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.60 49.0 4.28e-01 89.1% 82.1%
4945170 2006.1.1.18 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.60 51.0 3.61e-01 98.4% 79.5%
3502686 2484.1.1.88 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ParM_N 0.59 52.0 3.91e-01 100.0% 54.5%
3661711 592.1.1.1 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain › PWI 0.59 52.0 4.89e-01 100.0% 92.5%
3917133 108.1.1.40 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › STAT_linker 0.59 50.0 4.09e-01 90.6% 56.4%
4016006 148.1.3.279 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › HTH_AAA_fung 0.59 52.0 3.72e-01 96.9% 81.1%
3230385 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.58 48.0 4.17e-01 89.1% 63.2%
4041102 3960.1.1.1 ↗ alpha arrays › Aminoglycoside adenyltransferase AadA C-terminal domain › Aminoglycoside adenyltransferase AadA C-terminal domain › Aminoglycoside adenyltransferase AadA C-terminal domain › AadA_C 0.58 46.0 3.94e-01 100.0% 54.3%
2084570 592.7.1.1 ↗ alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain › GIPC1_GH2 0.58 50.0 4.43e-01 96.9% 73.9%
5072769 3960.1.1.0 ↗ alpha arrays › Aminoglycoside adenyltransferase AadA C-terminal domain › Aminoglycoside adenyltransferase AadA C-terminal domain › Aminoglycoside adenyltransferase AadA C-terminal domain 0.58 46.0 3.76e-01 100.0% 47.8%
3789516 592.1.1.1 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain › PWI 0.57 50.0 4.72e-01 100.0% 88.6%
3554793 592.1.1.0 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain 0.57 49.0 4.75e-01 100.0% 96.0%
4946647 3960.1.1.0 ↗ alpha arrays › Aminoglycoside adenyltransferase AadA C-terminal domain › Aminoglycoside adenyltransferase AadA C-terminal domain › Aminoglycoside adenyltransferase AadA C-terminal domain 0.57 46.0 3.54e-01 100.0% 39.3%
3783135 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.56 45.0 4.57e-01 87.5% 90.8%
4223095 592.1.1.0 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain 0.56 47.0 4.42e-01 95.3% 82.5%
3876351 592.1.1.1 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain › PWI 0.56 49.0 4.03e-01 100.0% 62.5%
3342850 592.7.1.0 ↗ alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain 0.56 47.0 4.55e-01 96.9% 90.7%
5029119 601.7.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.56 47.0 3.88e-01 100.0% 50.8%
3220832 592.7.1.1 ↗ alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain › GIPC1_GH2 0.55 46.0 4.22e-01 96.9% 77.8%
4027348 592.7.1.0 ↗ alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain 0.55 47.0 4.53e-01 98.4% 93.3%
3491886 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.55 35.0 3.36e-01 100.0% 54.7%
4373897 592.1.1.1 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain › PWI 0.54 47.0 4.50e-01 100.0% 92.0%
3300095 592.1.1.1 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain › PWI 0.54 45.0 4.53e-01 96.9% 100.0%
3297949 592.7.1.2 ↗ alpha arrays › PWI domain-like › GIPC1 GH2 domain › GIPC1 GH2 domain › PWI 0.54 45.0 4.52e-01 96.9% 100.0%
3616472 3115.1.1.0 ↗ a+b two layers › GP2-like › RplX-like › RplX-like 0.54 45.0 3.63e-01 98.4% 74.1%
5048936 3960.1.1.0 ↗ alpha arrays › Aminoglycoside adenyltransferase AadA C-terminal domain › Aminoglycoside adenyltransferase AadA C-terminal domain › Aminoglycoside adenyltransferase AadA C-terminal domain 0.53 46.0 3.76e-01 100.0% 51.7%
3684870 101.1.2.288 ↗ alpha arrays › HTH › HTH › winged helix domain › Stk19 0.53 45.0 3.73e-01 100.0% 52.1%
4112355 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.53 44.0 3.22e-01 93.8% 70.6%
3289269 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.53 43.0 3.76e-01 89.1% 66.3%
3585028 632.1.1.3 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › Alpha-mann_mid 0.52 38.0 3.31e-01 76.6% 77.0%
5077829 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.52 42.0 4.03e-01 89.1% 100.0%
4012744 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.52 44.0 3.58e-01 95.3% 60.8%
3532105 592.2.1.2 ↗ alpha arrays › PWI domain-like › YugE-like › YugE-like › WGG 0.51 44.0 3.62e-01 100.0% 63.2%
3221517 592.1.1.0 ↗ alpha arrays › PWI domain-like › PWI domain › PWI domain 0.51 43.0 4.37e-01 100.0% 98.5%
3933222 101.1.2.111 ↗ alpha arrays › HTH › HTH › winged helix domain › RQC 0.51 44.0 3.37e-01 100.0% 87.1%