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LC545444.1__BCD83128.1__NrS3_12__00012

Bact-Vir

LC545444.1__BCD83128.1__NrS3_12__00012

Identity

Accession:
LC545444 ↗
Kingdom:
phage

Quality

94.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Nitratiruptor_phage_NrS-3

TaxID: 2725865

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-89
PDB
Domain cluster: rep: MW291021.1__QPL14492.1__SEA_EHYELIMAYOE_177__00175__D3-97
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24732.3 best ParE_like 28.4 1.90e-06 78.4% 94.0%
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ml0B00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.86 79.0 7.87e-01 97.7% 98.9%
2kheA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.83 76.0 7.57e-01 100.0% 96.6%
3bpqD00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.81 73.0 7.41e-01 98.9% 98.8%
6n90A00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.81 75.0 7.52e-01 98.9% 98.9%
7bwfA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.81 72.0 7.28e-01 97.7% 96.6%
5cw7B00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.80 72.0 7.06e-01 95.5% 94.7%
1wmiA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.79 72.0 7.22e-01 96.6% 96.6%
2otrA00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.78 69.0 6.87e-01 95.5% 96.7%
4mcxF00 3.30.2310.20 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like 0.76 67.0 6.67e-01 95.5% 98.9%
1khiA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 34.0 3.70e-01 96.6% 63.9%
3er0A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 32.0 3.53e-01 93.2% 58.9%
1mdaH00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 41.0 2.73e-01 71.6% 32.6%
6qp7A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 42.0 2.64e-01 76.1% 36.0%
2fpqA00 3.90.1240.10 Alpha Beta › Alpha-Beta Complex › Zincin-like › "Metalloproteases (""zincins""), catalytic domain like" 0.57 43.0 2.82e-01 83.0% 45.7%
4hz9B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 49.0 4.36e-01 97.7% 94.3%
1sxjH02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.55 37.0 3.32e-01 70.5% 100.0%
1szzA00 3.90.45.10 Alpha Beta › Alpha-Beta Complex › Peptide Deformylase › Peptide deformylase 0.54 43.0 3.45e-01 85.2% 69.6%
3vpbE00 2.20.28.160 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.54 33.0 3.86e-01 100.0% 94.6%
4d47A00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 46.0 3.04e-01 100.0% 94.9%
2vrwB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 46.0 4.17e-01 100.0% 71.1%
3tdqA00 2.40.50.320 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Copper binding periplasmic protein CusF 0.53 29.0 2.96e-01 93.2% 52.3%
1dxkA00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.52 43.0 3.26e-01 90.9% 94.1%
3f40A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 42.0 3.92e-01 92.0% 70.3%
4aezA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 45.0 3.00e-01 94.3% 93.6%
4i9xA00 2.60.40.3790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 42.0 3.37e-01 92.0% 64.2%
1e8uA00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.51 45.0 2.92e-01 100.0% 35.7%
3r7wB02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.51 44.0 4.02e-01 100.0% 72.9%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5027803 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.91 78.0 8.16e-01 97.7% 98.8%
5080337 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.91 83.0 8.31e-01 100.0% 95.5%
5080208 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.89 83.0 8.22e-01 98.9% 95.6%
4940748 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.88 76.0 7.85e-01 100.0% 96.4%
5018712 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.87 82.0 8.12e-01 100.0% 96.7%
4950220 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.87 81.0 8.07e-01 98.9% 96.7%
4937283 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.87 80.0 7.88e-01 98.9% 96.8%
5031302 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.87 79.0 7.35e-01 95.5% 98.1%
5028034 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.86 75.0 7.47e-01 98.9% 90.0%
3165472 4312.1.1.10 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › YafQ_toxin 0.86 74.0 7.20e-01 90.9% 92.6%
1297412 4312.1.1.10 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › YafQ_toxin 0.86 79.0 7.81e-01 97.7% 97.8%
5044967 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.86 80.0 7.93e-01 100.0% 95.6%
4948982 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.86 79.0 7.87e-01 97.7% 96.7%
4933908 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.84 73.0 7.44e-01 92.0% 95.3%
3944846 4312.1.1.4 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 0.84 78.0 7.07e-01 100.0% 84.3%
3810856 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.83 78.0 6.65e-01 100.0% 71.1%
4937366 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.83 78.0 7.57e-01 100.0% 93.7%
3376563 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.83 77.0 6.35e-01 100.0% 62.7%
2807914 4312.1.1.6 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › YoeB_toxin 0.82 72.0 7.24e-01 94.3% 93.3%
4967379 4312.1.1.4 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 0.82 71.0 7.25e-01 94.3% 96.5%
3589620 4312.1.1.11 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE-like_toxin 0.81 75.0 7.51e-01 98.9% 96.7%
4463632 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.81 72.0 7.22e-01 94.3% 97.8%
2549544 4312.1.1.6 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › YoeB_toxin 0.81 75.0 7.52e-01 98.9% 98.9%
2629016 4312.1.1.6 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › YoeB_toxin 0.81 72.0 7.28e-01 97.7% 96.6%
3982278 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.80 72.0 7.14e-01 95.5% 97.8%
1124757 4312.1.1.2 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › HigB-like_toxin 0.80 69.0 6.84e-01 93.2% 98.9%
4646165 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.80 73.0 7.33e-01 97.7% 96.7%
2523878 4312.1.1.4 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › Gp49 0.80 74.0 6.59e-01 100.0% 84.0%
4544637 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.79 73.0 7.20e-01 98.9% 96.8%
1877168 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.78 72.0 7.11e-01 97.7% 95.7%
2770566 4312.1.1.3 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › ParE_toxin 0.78 68.0 6.68e-01 93.2% 95.7%
4968449 4312.1.1.15 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › DUF4258 0.76 54.0 6.12e-01 90.9% 100.0%
4284219 4312.1.1.21 ↗ a+b two layers › RelE-like › RelE-like › RelE-like › PF29782 0.75 67.0 5.96e-01 97.7% 97.6%
3785321 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.69 55.0 5.25e-01 100.0% 74.0%
3844416 5.1.4.229 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_EMC1_N 0.65 46.0 2.94e-01 71.6% 27.9%
3664013 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.65 45.0 3.05e-01 70.5% 37.3%
3917456 5.1.5.93 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_EMC1_N 0.65 45.0 2.85e-01 71.6% 26.4%
3695012 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.64 44.0 2.83e-01 71.6% 29.3%
3466183 5.1.5.75 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, ANAPC4_WD40 0.63 44.0 2.94e-01 71.6% 38.1%
3641304 5.1.5.75 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, ANAPC4_WD40 0.63 44.0 3.43e-01 71.6% 67.8%
3798327 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 44.0 2.92e-01 71.6% 38.8%
3574550 5.1.4.275 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, ANAPC4_WD40, Beta-prop_NOL10_N 0.63 44.0 2.93e-01 71.6% 39.4%
3717696 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 44.0 2.84e-01 71.6% 28.5%
3406442 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.63 44.0 2.83e-01 71.6% 25.0%
3940283 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.62 43.0 2.92e-01 70.5% 30.8%
3219070 5.1.3.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › WD40 0.62 43.0 2.63e-01 71.6% 17.5%
4025611 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 43.0 2.69e-01 70.5% 22.8%
3484745 5.1.4.313 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_BBS7 0.61 42.0 2.86e-01 71.6% 29.5%
3489812 5.1.4.5 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,CAF1C_H4-bd 0.61 42.0 2.69e-01 71.6% 27.6%
4048802 5.1.4.369 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › EMC1_C, Beta-prop_EMC1_N 0.61 42.0 2.43e-01 71.6% 15.1%
3843500 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.61 41.0 2.62e-01 70.5% 22.2%
3470979 5.1.4.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.60 41.0 2.80e-01 70.5% 28.4%
3200228 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.59 40.0 2.55e-01 70.5% 21.5%
3620195 5.1.4.289 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, eIF2A, ANAPC4_WD40 0.59 41.0 2.80e-01 71.6% 32.3%
4025866 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.58 40.0 2.69e-01 71.6% 29.6%
None — 0.58 40.0 2.62e-01 70.5% 28.6%
3789364 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 51.0 3.35e-01 98.9% 34.5%
3738403 5.1.4.32 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nucleoporin_N 0.56 49.0 3.06e-01 95.5% 81.0%
1512998 3953.1.1.1 ↗ a+b two layers › Csd3 N-terminal domain › Csd3 N-terminal domain › Csd3 N-terminal domain › Csd3_N 0.55 39.0 3.97e-01 93.2% 75.3%
3268088 5.1.4.426 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, CAF1C_H4-bd, ANAPC4_WD40 0.55 38.0 2.50e-01 71.6% 28.1%
5004981 3335.1.1.0 ↗ beta barrels › Handle domain in transferrin-binding protein B › Handle domain in transferrin-binding protein B › Handle domain in transferrin-binding protein B 0.55 34.0 3.86e-01 95.5% 86.2%
3247159 63.1.1.8 ↗ beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › PRKCSH, PRKCSH_1 0.53 41.0 3.35e-01 85.2% 97.7%
3877211 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.52 45.0 2.91e-01 97.7% 31.5%
3574696 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.52 41.0 2.70e-01 87.5% 76.3%
3236101 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.51 39.0 3.79e-01 86.4% 72.0%
3619275 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.51 44.0 2.96e-01 95.5% 93.4%
3996653 5.1.4.377 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR35_TULP_N 0.50 44.0 3.00e-01 100.0% 40.6%