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LC545445.1__BCD83184.1__NrS4_02__00002

Bact-Vir

LC545445.1__BCD83184.1__NrS4_02__00002

Identity

Accession:
LC545445 ↗
Kingdom:
phage

Quality

88.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Nitratiruptor_phage_NrS-4

TaxID: 2725866

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-72
PDB
Domain cluster: representative
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2kvvA00 1.10.1660.60 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › Putative excisionased domain DUF1233 0.83 65.0 6.27e-01 84.1% 82.1%
1r8eA02 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.81 60.0 5.93e-01 81.2% 74.0%
5d8cA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.76 59.0 4.75e-01 84.1% 45.2%
3hh0A01 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.75 57.0 5.67e-01 84.1% 77.8%
3gpvA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.74 59.0 4.97e-01 87.0% 85.0%
3gp4B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.73 57.0 4.56e-01 84.1% 43.8%
4lhfA00 6.10.200.10 Special › Helix non-globular › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › Regulatory phage protein Cox 0.64 53.0 5.13e-01 91.3% 88.6%
1in4A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 42.0 4.17e-01 73.9% 68.5%
2a61B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 40.0 3.25e-01 72.5% 37.2%
6uvuA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 46.0 4.11e-01 92.8% 59.6%
2wteA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 42.0 4.14e-01 78.3% 73.6%
1zarA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 45.0 4.19e-01 89.9% 68.5%
3oopA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 44.0 3.65e-01 91.3% 48.5%
3cuoD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 42.0 3.87e-01 97.1% 62.8%
3gw2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 43.0 3.90e-01 85.5% 65.6%
2ek5B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 40.0 3.52e-01 81.2% 70.6%
2esnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 42.0 3.98e-01 88.4% 74.2%
6g1dA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 43.0 4.14e-01 91.3% 84.1%
4gcvC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 45.0 3.70e-01 100.0% 56.0%
1ub9A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 41.0 3.72e-01 87.0% 64.0%
1r1uB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 43.0 3.94e-01 91.3% 66.7%
2zetC00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.53 28.0 2.22e-01 85.5% 22.7%
1g9gA03 4.10.870.10 Few Secondary Structures › Irregular › Endo-1,4-beta-glucanase f; domain 3 › Endo-1,4-beta-glucanase f. Domain 3 0.53 34.0 3.49e-01 100.0% 68.2%
3hhgE01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 41.0 3.83e-01 89.9% 78.4%
2bngC00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 39.0 3.16e-01 82.6% 66.4%
3fxqB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 39.0 3.70e-01 87.0% 75.6%
8hi4A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.51 39.0 2.73e-01 85.5% 65.9%
5trdA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 39.0 3.77e-01 88.4% 75.0%
3e9lA02 1.20.80.40 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › Prp8 RNase H domain, fingers region 0.50 42.0 3.87e-01 97.1% 89.5%
4bjqA00 1.10.150.770 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.50 34.0 3.27e-01 100.0% 61.5%
5y2vC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 40.0 3.78e-01 91.3% 77.6%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3980333 101.1.9.10 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF1233 0.84 66.0 6.63e-01 84.1% 91.4%
138911 101.1.9.10 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF1233 0.82 63.0 6.29e-01 81.2% 87.1%
3965196 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.78 60.0 6.34e-01 84.1% 93.3%
1316879 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.77 58.0 6.09e-01 79.7% 90.2%
2325046 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.76 57.0 4.74e-01 82.6% 45.8%
3282573 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.76 59.0 4.77e-01 84.1% 45.6%
3280706 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.75 55.0 5.23e-01 82.6% 66.3%
3587635 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.74 56.0 5.96e-01 82.6% 93.3%
4470278 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.73 57.0 4.79e-01 84.1% 79.1%
5075145 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.72 57.0 5.83e-01 84.1% 92.3%
3589820 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.72 56.0 4.58e-01 84.1% 76.0%
3942751 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.71 60.0 4.95e-01 91.3% 55.0%
4008376 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.70 54.0 5.69e-01 82.6% 95.0%
3976170 101.1.9.26 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › YfeC-like 0.69 53.0 5.31e-01 82.6% 84.3%
3961155 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.67 59.0 4.77e-01 100.0% 91.9%
5011250 101.1.2.30 ↗ alpha arrays › HTH › HTH › winged helix domain › TrmB 0.64 42.0 3.61e-01 72.5% 41.8%
3948669 101.1.9.26 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › YfeC-like 0.64 51.0 4.33e-01 88.4% 53.9%
3979592 101.1.9.26 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › YfeC-like 0.63 55.0 4.64e-01 100.0% 59.2%
4079854 101.1.2.530 ↗ alpha arrays › HTH › HTH › winged helix domain › HVO_A0114 0.60 45.0 4.45e-01 84.1% 76.0%
4986964 101.1.2.46 ↗ alpha arrays › HTH › HTH › winged helix domain › HrcA_DNA-bdg 0.60 42.0 3.91e-01 72.5% 68.2%
5029522 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.60 52.0 4.74e-01 100.0% 75.8%
5057802 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.60 41.0 3.35e-01 72.5% 39.3%
5076531 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 41.0 4.25e-01 73.9% 78.5%
3587558 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.57 39.0 3.95e-01 72.5% 72.9%
5029669 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.56 28.0 2.37e-01 85.5% 26.7%
5006816 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.55 43.0 4.12e-01 89.9% 73.8%
4998981 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 46.0 4.36e-01 95.7% 76.5%
3497704 101.1.2.373 ↗ alpha arrays › HTH › HTH › winged helix domain › PHD_5 0.55 42.0 3.28e-01 82.6% 40.0%
3285732 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 42.0 3.47e-01 87.0% 42.9%
2697269 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.55 45.0 3.93e-01 97.1% 57.0%
3637098 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.55 28.0 2.28e-01 85.5% 24.8%
4928469 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 44.0 4.30e-01 92.8% 81.2%
3279636 101.1.2.1 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.55 42.0 3.95e-01 87.0% 76.7%
3970816 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 42.0 3.94e-01 87.0% 75.6%
3645693 101.1.2.516 ↗ alpha arrays › HTH › HTH › winged helix domain › PF25895 0.54 42.0 3.79e-01 95.7% 60.0%
3787269 192.2.1.1 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin_2 0.54 28.0 2.43e-01 85.5% 30.0%
4993511 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.54 44.0 4.11e-01 95.7% 71.1%
4137092 101.1.2.1 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.54 42.0 4.07e-01 87.0% 85.0%
3494091 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 41.0 3.73e-01 82.6% 63.2%
3986748 101.1.2.1 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.54 42.0 3.89e-01 87.0% 75.6%
4371313 101.1.2.1 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.54 44.0 4.01e-01 92.8% 71.6%
3967673 101.1.2.1 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.54 42.0 3.95e-01 89.9% 76.7%
5010381 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 44.0 3.88e-01 97.1% 68.2%
4185875 101.1.2.1 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.53 42.0 4.01e-01 91.3% 80.0%
3981748 101.1.2.1 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.53 42.0 4.00e-01 91.3% 80.0%
4927802 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 40.0 3.21e-01 87.0% 38.1%
3284225 101.1.2.1 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.53 42.0 4.08e-01 91.3% 81.2%
3989440 101.1.2.1 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.53 42.0 3.92e-01 91.3% 78.9%
3943933 101.1.2.1 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.53 40.0 3.77e-01 87.0% 75.6%
3948722 101.1.2.1 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.52 41.0 3.79e-01 89.9% 71.6%
3284253 101.1.2.1 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.52 40.0 3.75e-01 87.0% 73.3%
4031672 101.1.2.1 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.52 41.0 3.96e-01 91.3% 85.0%
3387117 101.1.2.1 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.52 41.0 4.00e-01 91.3% 82.5%
3590569 101.1.2.1 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.51 41.0 3.96e-01 91.3% 82.5%
5037176 101.1.2.92 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_11 0.51 42.0 3.90e-01 95.7% 71.1%
3946625 101.1.2.1 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.51 41.0 3.77e-01 91.3% 74.7%
4937536 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 37.0 3.56e-01 78.3% 78.8%
3941446 101.1.2.1 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.51 43.0 4.04e-01 95.7% 80.0%
4004508 101.1.2.1 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.51 41.0 3.96e-01 91.3% 85.0%
2831957 101.1.2.1 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.50 42.0 3.94e-01 97.1% 79.8%
3966995 101.1.2.1 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.50 42.0 3.92e-01 97.1% 85.6%
4588125 101.1.2.1 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_1 0.50 39.0 3.81e-01 91.3% 85.0%