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LC545445.1__BCD83196.1__NrS4_14__00014

Bact-Vir

LC545445.1__BCD83196.1__NrS4_14__00014

Identity

Accession:
LC545445 ↗
Kingdom:
phage

Quality

82.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-93
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03837.20 best RecT 29.8 6.20e-07 94.2% 24.4%
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1h3lB00 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.73 53.0 5.57e-01 82.6% 84.6%
2aplA01 1.10.8.330 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PG0816-like 0.72 50.0 5.49e-01 72.1% 100.0%
2lyiA01 1.10.274.60 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, repetitive domain 0.69 48.0 3.99e-01 75.6% 41.9%
3vkgA09 1.20.920.30 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › 0.69 56.0 4.75e-01 89.5% 67.4%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.67 52.0 4.92e-01 83.7% 98.1%
1c9bA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.64 48.0 4.51e-01 81.4% 100.0%
2ivxB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.62 49.0 4.23e-01 87.2% 77.9%
1zp2A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.62 50.0 4.56e-01 87.2% 89.3%
2i53A01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.62 50.0 4.19e-01 87.2% 73.4%
5xs2B02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.62 49.0 4.29e-01 87.2% 81.8%
7s0rB01 1.20.81.20 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › 0.61 42.0 4.43e-01 73.3% 88.2%
2gfhA02 1.20.120.710 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain 0.60 43.0 4.33e-01 82.6% 75.6%
2y1eA03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.56 45.0 4.58e-01 90.7% 96.6%
3a06B03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.56 45.0 4.54e-01 90.7% 97.7%
5ekcF01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.55 49.0 3.41e-01 100.0% 52.2%
5j6bD01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.54 48.0 3.36e-01 100.0% 47.4%
3fedA03 1.20.930.40 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Transferrin receptor-like, dimerisation domain 0.54 42.0 3.55e-01 86.0% 89.7%
6fjxA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.54 47.0 3.35e-01 100.0% 48.0%
7w5lA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.53 46.0 3.35e-01 100.0% 51.2%
1ez0B01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.53 45.0 3.11e-01 95.3% 79.5%
1t90A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.53 46.0 3.27e-01 100.0% 54.6%
4i8qA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.52 45.0 3.18e-01 100.0% 44.0%
3rh9A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.51 44.0 3.12e-01 100.0% 52.9%
3ju8A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.50 40.0 2.83e-01 87.2% 76.1%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4969272 101.1.10.3 alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.68 52.0 4.71e-01 82.6% 85.8%
4013352 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.68 51.0 5.58e-01 86.0% 100.0%
5064398 101.1.10.3 alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.67 50.0 4.80e-01 80.2% 97.0%
3890040 101.1.10.3 alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.65 50.0 4.28e-01 82.6% 70.7%
4273747 101.1.10.3 alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.65 50.0 4.18e-01 82.6% 69.3%
3749743 4072.1.1.1 a+b complex topology › BTG domain-like › BTG domain-like › BTG domain-like › BTG 0.64 51.0 4.27e-01 83.7% 59.3%
5051285 101.1.10.3 alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.64 51.0 4.14e-01 87.2% 54.5%
3696984 5049.1.1.1 alpha complex topology › Ammonium transporter-related › Ammonium transporter-related › Ammonium transporter › Ammonium_transp 0.64 55.0 3.57e-01 100.0% 29.5%
4972967 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.64 52.0 5.24e-01 89.5% 95.2%
4042777 148.1.3.4 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › CbbQ_C 0.63 48.0 4.77e-01 81.4% 77.8%
4978149 101.1.10.3 alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.62 49.0 4.79e-01 86.0% 93.7%
3273891 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.62 49.0 4.43e-01 87.2% 82.5%
3476361 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.61 49.0 4.43e-01 87.2% 89.2%
3703267 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.61 48.0 4.38e-01 87.2% 85.0%
3728766 101.1.10.3 alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.60 49.0 4.10e-01 89.5% 68.7%
3204144 101.1.10.3 alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.60 48.0 4.24e-01 88.4% 72.3%
3934162 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.60 41.0 3.84e-01 70.9% 83.8%
3589646 1037.1.1.1 alpha bundles › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › LGT 0.59 41.0 2.92e-01 72.1% 35.0%
3598088 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.59 47.0 4.13e-01 87.2% 78.5%
3787293 101.1.10.3 alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.59 47.0 4.22e-01 88.4% 74.4%
5042604 101.1.10.3 alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.59 50.0 4.14e-01 94.2% 90.3%
4255360 1037.1.1.1 alpha bundles › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › LGT 0.58 45.0 3.27e-01 88.4% 79.6%
3420479 5073.1.2.13 alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Copper efflux ATPase transmembrane domain › Cation_ATPase_C, Cation_ATPase_N 0.58 48.0 3.51e-01 95.3% 44.6%
4420204 1037.1.1.1 alpha bundles › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › LGT 0.56 48.0 3.47e-01 96.5% 84.9%
3590182 4979.1.1.0 alpha arrays › C-terminal domain of Hypothetical protein MPN330-like › C-terminal domain of Hypothetical protein MPN330 › C-terminal domain of Hypothetical protein MPN330 0.55 44.0 4.42e-01 87.2% 92.9%
4524125 1037.1.1.1 alpha bundles › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › Prolipoprotein diacylglyceryl transferase › LGT 0.54 43.0 3.18e-01 88.4% 78.8%
3654988 5050.1.1.0 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.54 45.0 3.31e-01 95.3% 68.0%
3962097 5050.1.1.9 alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 0.53 41.0 3.45e-01 86.0% 54.6%
3254327 524.1.1.1 alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p › RabGAP-TBC 0.53 45.0 3.84e-01 98.8% 70.7%
4918913 7524.1.1.1 a/b three-layered sandwiches › ALDH-like › ALDH-like › ALDH-like › Aldedh 0.51 44.0 3.28e-01 100.0% 66.4%
D2 high residues 99-210
PDB
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1z47A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 26.0 3.79e-01 91.1% 75.5%
1wznA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.68 32.0 4.37e-01 83.0% 89.3%
5cbeE00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 27.0 3.56e-01 94.6% 71.9%
3pcrA01 3.10.450.460 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › EspG protein, N-terminal domain 0.61 34.0 3.71e-01 96.4% 66.0%
3dgcS01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 37.0 3.90e-01 84.8% 79.4%
2wllA02 2.60.40.1400 Mainly Beta › Sandwich › Immunoglobulin-like › G protein-activated inward rectifier potassium channel 1 0.53 40.0 3.69e-01 79.5% 85.5%
2ky8A00 3.30.890.10 Alpha Beta › 2-Layer Sandwich › Methyl-cpg-binding Protein 2; Chain A › Methyl-cpg-binding Protein 2; Chain A 0.52 29.0 3.57e-01 99.1% 87.1%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 29.0 3.31e-01 98.2% 72.1%
4aq1A02 2.60.40.1080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 34.0 3.73e-01 84.8% 81.3%
2c4xA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 31.0 3.41e-01 84.8% 72.3%
5irbA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 34.0 3.53e-01 83.9% 72.1%
5umsA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 30.0 3.12e-01 98.2% 63.7%
ECOD (13)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4423403 330.1.1.14 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › RecT 0.84 71.0 6.41e-01 100.0% 69.0%
3658595 2.1.1.130 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF223 0.72 34.0 4.24e-01 92.0% 71.4%
3468906 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.71 33.0 3.81e-01 92.0% 58.8%
5044389 4.26.1.0 beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 0.70 27.0 3.88e-01 90.2% 76.0%
3811281 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 32.0 3.73e-01 90.2% 58.8%
4961432 218.1.1.1 a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N 0.69 36.0 3.87e-01 92.0% 58.9%
5064060 896.1.1.4 a+b two layers › SRP9/14-like › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › Signal recognition particle alu RNA binding heterodimer SRP9/14-related › DDE_Tnp_IS66 0.67 31.0 3.80e-01 94.6% 68.6%
4979306 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.61 36.0 4.32e-01 78.6% 86.7%
3400905 210.1.1.1 a+b four layers › Ntn/PP2C › Ntn › Proteasome subunits › Proteasome 0.56 42.0 3.42e-01 79.5% 94.9%
3932246 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 37.0 3.67e-01 73.2% 76.5%
5014602 504.1.1.0 a+b two layers › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB › Bacterial protein-export protein SecB 0.51 38.0 3.60e-01 92.9% 66.2%
5068725 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 33.0 3.99e-01 83.9% 100.0%
4084495 2.1.1.6 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.50 30.0 3.07e-01 87.5% 61.0%
D3 high residues 276-325
PDB
Domain cluster: representative
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kp1E02 1.10.8.1000 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ornithine 4,5 aminomutase S component, alpha subunit-like 0.72 63.0 5.62e-01 98.0% 81.4%
1dv0A00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.70 54.0 5.59e-01 100.0% 97.8%
1ynbA00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.70 51.0 3.56e-01 80.0% 65.3%
1wtjB01 1.10.1530.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.68 58.0 4.68e-01 96.0% 54.6%
3f2bA07 6.10.140.1510 Special › Helix non-globular › Helix Hairpins › 0.68 53.0 4.38e-01 84.0% 59.3%
1xrhD01 1.10.1530.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.68 59.0 4.68e-01 100.0% 56.3%
4h8aB01 1.10.1530.10 Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel 0.65 57.0 5.41e-01 100.0% 91.7%
2abqA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.61 51.0 3.10e-01 92.0% 15.4%
3mbhA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.61 53.0 3.27e-01 98.0% 20.4%
3ci0K02 1.10.40.60 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › EpsJ-like 0.61 54.0 4.06e-01 96.0% 68.1%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3988185 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.82 61.0 6.69e-01 98.0% 100.0%
4388170 103.1.1.6 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C 0.70 60.0 5.65e-01 96.0% 85.0%
5024880 7014.1.1.2 alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › TauE 0.60 52.0 3.86e-01 92.0% 41.7%