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LC545445.1__BCD83197.1__NrS4_15__00015

Bact-Vir

LC545445.1__BCD83197.1__NrS4_15__00015

Identity

Accession:
LC545445 ↗
Kingdom:
phage

Quality

83.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Nitratiruptor_phage_NrS-4

TaxID: 2725866

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-99
PDB
Domain cluster: rep: Bro25__YP_009702174__Heliothis_virescens_ascovirus_3g__1246651__D4-128
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4b43A01 1.10.10.2480 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.73 41.0 4.86e-01 70.4% 80.9%
2kvvA00 1.10.1660.60 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › Putative excisionased domain DUF1233 0.66 43.0 4.74e-01 70.4% 83.3%
2p92A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.61 38.0 3.85e-01 85.7% 64.2%
7rh9A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 42.0 3.63e-01 79.6% 85.9%
3lpxB02 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.54 39.0 4.03e-01 77.6% 90.4%
1kyzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 37.0 3.72e-01 91.8% 69.9%
2qyxB01 3.30.70.1360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › mj0159-like 0.52 34.0 3.35e-01 96.9% 60.6%
5e1wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 36.0 3.04e-01 88.8% 41.7%
4rmoA00 3.10.129.130 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › 0.51 45.0 3.96e-01 100.0% 94.8%
3sz7A00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 39.0 3.33e-01 92.9% 51.7%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5070666 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.80 45.0 5.85e-01 71.4% 100.0%
3983963 101.1.9.41 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › ORF6N 0.78 72.0 7.01e-01 96.9% 100.0%
4549467 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.76 45.0 5.66e-01 91.8% 98.3%
4998593 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.76 58.0 5.51e-01 80.6% 73.9%
4548007 101.1.9.16 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 0.75 47.0 5.05e-01 71.4% 72.9%
4271700 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.73 47.0 5.59e-01 95.9% 96.9%
4032453 101.1.9.78 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › AntA 0.73 58.0 5.97e-01 85.7% 100.0%
3941747 101.1.9.78 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › AntA 0.70 62.0 5.98e-01 98.0% 100.0%
3885964 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.70 63.0 5.59e-01 100.0% 89.3%
4981949 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 42.0 4.55e-01 80.6% 82.5%
3284686 101.1.9.84 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR, MerR_1 0.61 49.0 3.66e-01 84.7% 99.6%
4640230 306.8.1.1 ↗ a+b two layers › Glucose permease domain IIB-like › TM1457-like › TM1457-like › Peptidase_Prp 0.60 36.0 3.67e-01 87.8% 61.1%
4945595 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.59 36.0 3.46e-01 84.7% 51.3%
5052581 242.2.1.2 ↗ a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like › tRNA_int_endo_N 0.59 44.0 4.69e-01 89.8% 92.9%
4334333 101.1.9.1 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR,MerR-DNA-bind 0.58 47.0 4.15e-01 95.9% 60.0%
3895815 327.16.1.13 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif II in type III secretion system › Ring-building motif II in type III secretion system › KH_PARP14_2 0.58 34.0 3.99e-01 83.7% 82.9%
4989039 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.57 43.0 3.65e-01 79.6% 89.4%
4998580 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 38.0 3.93e-01 75.5% 74.4%
5022036 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 41.0 3.68e-01 76.5% 69.6%
4928248 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 40.0 3.66e-01 75.5% 80.0%
5010819 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 40.0 3.49e-01 90.8% 50.0%
5052844 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.54 39.0 3.05e-01 74.5% 42.9%
4469646 4246.1.1.2 ↗ a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 0.54 37.0 2.66e-01 71.4% 85.8%
3589866 101.1.2.66 ↗ alpha arrays › HTH › HTH › winged helix domain › Mga 0.53 35.0 3.80e-01 73.5% 80.0%
3332006 101.1.2.245 ↗ alpha arrays › HTH › HTH › winged helix domain › PORR 0.52 38.0 3.60e-01 92.9% 62.5%
5048181 101.1.2.819 ↗ alpha arrays › HTH › HTH › winged helix domain › PF27231 0.52 40.0 3.37e-01 82.7% 70.0%
5062639 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.51 36.0 3.67e-01 76.5% 75.8%
3591785 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.50 39.0 3.50e-01 86.7% 89.3%
5068144 316.1.1.0 ↗ a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.50 44.0 3.74e-01 96.9% 79.4%
D2 medium residues 131-234
PDB
Domain cluster: representative