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LC545445.1__BCD83202.1__NrS4_20__00020

Bact-Vir

LC545445.1__BCD83202.1__NrS4_20__00020

Identity

Accession:
LC545445 ↗
Kingdom:
phage

Quality

93.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Nitratiruptor_phage_NrS-4

TaxID: 2725866

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-112
PDB
Domain cluster: rep: NC_027299.1__YP_009146220.1__SUFP_046__00046__D4-101
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF10544.16 best T5orf172 26.5 1.00e-05 87.4% 94.9%
PF13455.13 MUG113 38.7 1.60e-09 75.8% 95.9%
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ln0A00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.74 52.0 5.35e-01 72.6% 98.9%
3h20A01 3.30.1490.240 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain 0.59 32.0 3.70e-01 95.8% 74.2%
3f75P00 1.10.287.2250 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.52 32.0 3.55e-01 85.3% 77.3%
2wp7A00 3.90.1720.30 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › PPPDE domains 0.52 39.0 3.40e-01 93.7% 49.4%
4xhyA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 43.0 3.70e-01 93.7% 75.8%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4016088 821.1.1.3 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › T5orf172 0.78 73.0 7.04e-01 100.0% 100.0%
3288892 304.163.1.0 ↗ a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.76 37.0 5.19e-01 88.4% 100.0%
3698242 821.1.1.10 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › MUG113 0.75 70.0 6.38e-01 100.0% 82.1%
4995671 3115.1.1.12 ↗ a+b two layers › GP2-like › RplX-like › RplX-like › PF30567 0.73 37.0 5.04e-01 95.8% 96.0%
4980287 821.1.1.0 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.72 50.0 5.30e-01 74.7% 81.2%
4996322 821.1.1.14 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF2797 0.71 59.0 5.70e-01 92.6% 80.0%
4931929 821.1.1.14 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF2797 0.69 57.0 5.87e-01 87.4% 96.7%
3389034 379.1.1.0 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.69 38.0 4.76e-01 72.6% 92.7%
4974123 821.1.1.14 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF2797 0.69 57.0 5.62e-01 88.4% 92.0%
4969409 821.1.1.14 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF2797 0.69 59.0 5.50e-01 91.6% 87.0%
4151900 301.1.1.2 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.66 44.0 3.79e-01 100.0% 45.1%
3970696 821.1.1.0 ↗ a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease 0.63 48.0 4.53e-01 98.9% 68.1%
3412052 379.1.1.0 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.63 35.0 4.15e-01 73.7% 85.0%
3488989 108.1.1.98 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_5, EF-hand_7 0.60 42.0 4.64e-01 93.7% 100.0%
5048876 3986.2.1.0 ↗ a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.60 35.0 4.07e-01 95.8% 84.6%
3388590 379.1.1.0 ↗ few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.57 32.0 3.77e-01 72.6% 83.3%
4949204 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.56 39.0 3.01e-01 72.6% 57.9%
3637444 4121.1.1.0 ↗ a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like 0.55 48.0 3.60e-01 100.0% 91.8%
4986747 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.54 38.0 3.04e-01 72.6% 74.4%
4355247 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.54 38.0 3.03e-01 72.6% 75.3%
3987406 3115.6.1.1 ↗ a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › RpoY 0.54 38.0 4.15e-01 73.7% 100.0%
3489091 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.54 37.0 2.95e-01 72.6% 69.5%
3803359 304.3.1.1 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › HMA 0.53 43.0 4.64e-01 97.9% 100.0%
4620263 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.53 37.0 2.90e-01 72.6% 68.3%
3988347 140.1.1.0 ↗ alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 0.52 36.0 2.92e-01 72.6% 74.1%
4074695 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.52 36.0 2.92e-01 72.6% 74.6%
4974214 225.1.1.0 ↗ a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 0.51 35.0 2.81e-01 70.5% 84.3%
D2 medium residues 117-173
PDB
Domain cluster: representative