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LC545445.1__BCD83205.1__NrS4_23__00023

Bact-Vir

LC545445.1__BCD83205.1__NrS4_23__00023

Identity

Accession:
LC545445 ↗
Kingdom:
phage

Quality

74.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Nitratiruptor_phage_NrS-4

TaxID: 2725866

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-84
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01381.29 best HTH_3 34.0 3.30e-08 54.8% 74.6%
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3u3wA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.71 47.0 5.18e-01 71.4% 84.1%
3mlfE00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.69 50.0 5.04e-01 77.4% 84.9%
1y9qA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.65 41.0 4.14e-01 71.4% 63.5%
1b0nA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.63 52.0 4.93e-01 91.7% 75.7%
7ezyA01 1.10.3100.10 Mainly Alpha › Orthogonal Bundle › Putative cytoplasmic protein › Putative cytoplasmic protein 0.62 44.0 3.92e-01 94.0% 53.0%
1x57A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.62 49.0 4.80e-01 84.5% 91.2%
3fyaB00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.61 42.0 4.38e-01 71.4% 83.1%
2xcjA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.60 46.0 4.61e-01 81.0% 86.9%
4ybaA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.60 45.0 4.69e-01 86.9% 87.0%
3v2lA00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.58 41.0 3.72e-01 75.0% 96.7%
4jcyA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.57 48.0 4.68e-01 92.9% 85.9%
3cz1A00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.56 39.0 3.57e-01 73.8% 93.2%
3g7dA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.55 39.0 3.94e-01 76.2% 73.3%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3953562 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.74 51.0 5.56e-01 71.4% 88.6%
5003294 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.73 49.0 5.21e-01 82.1% 77.3%
1185986 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.73 48.0 4.85e-01 77.4% 66.3%
5083215 101.1.4.18 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_31 0.73 48.0 5.45e-01 77.4% 87.7%
3591049 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.73 52.0 4.22e-01 86.9% 41.3%
3976255 101.1.4.17 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_26 0.73 47.0 4.93e-01 71.4% 73.3%
3589299 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.72 50.0 4.69e-01 88.1% 60.0%
3967547 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.69 46.0 5.05e-01 90.5% 82.9%
3587838 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.69 48.0 5.21e-01 77.4% 85.7%
4008186 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.69 51.0 4.47e-01 83.3% 54.2%
3978875 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.68 52.0 4.66e-01 86.9% 59.1%
3944738 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.68 47.0 4.95e-01 77.4% 80.0%
4507416 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.67 49.0 4.44e-01 85.7% 58.2%
3989087 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.67 54.0 4.90e-01 94.0% 65.5%
3978391 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.66 46.0 4.94e-01 71.4% 85.7%
3957550 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.66 46.0 5.03e-01 82.1% 87.1%
None — 0.66 44.0 4.87e-01 82.1% 87.7%
2773 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.66 45.0 4.66e-01 75.0% 76.6%
3164312 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.66 46.0 4.71e-01 82.1% 76.2%
3977590 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.65 44.0 4.67e-01 76.2% 78.7%
148652 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.63 49.0 4.88e-01 84.5% 98.9%
147355 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.61 42.0 4.43e-01 71.4% 84.2%
4425759 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.61 52.0 4.75e-01 91.7% 91.8%
3963744 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.61 46.0 4.76e-01 89.3% 86.3%
3985012 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.60 42.0 4.37e-01 84.5% 81.3%
3504520 101.1.4.3 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.57 49.0 4.63e-01 92.9% 79.0%
4536849 10.12.1.146 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › HTH_3 0.55 45.0 2.87e-01 89.3% 53.7%