Back to structures

LC545445.1__BCD83212.1__NrS4_30__00030

Bact-Vir

LC545445.1__BCD83212.1__NrS4_30__00030

Identity

Accession:
LC545445 ↗
Kingdom:
phage

Quality

71.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-82
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3vfzB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 53.0 5.88e-01 70.0% 84.1%
1s7oB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 53.0 4.76e-01 75.0% 53.3%
3hugA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 51.0 5.18e-01 76.2% 70.0%
3t0yA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 47.0 5.42e-01 70.0% 88.3%
4nb5B01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 54.0 5.34e-01 78.8% 75.3%
1o57A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 48.0 5.02e-01 78.8% 75.0%
4go1A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 44.0 5.30e-01 72.5% 92.6%
2v9vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 41.0 4.62e-01 70.0% 75.0%
5jbrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 55.0 5.37e-01 83.7% 76.7%
6s6hA01 1.10.10.2830 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.71 53.0 4.83e-01 91.3% 58.7%
2fbhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 48.0 4.02e-01 73.8% 57.7%
1j1vA00 1.10.1750.10 Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain 0.68 53.0 5.08e-01 85.0% 83.0%
1zarA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 45.0 4.36e-01 80.0% 67.4%
4rgxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 44.0 3.76e-01 73.8% 46.3%
1iyrA00 1.10.1490.10 Mainly Alpha › Orthogonal Bundle › Dna Fragmentation Factor Alpha Subunit; Chain: A; › C-terminal domain of DFF45/ICAD (DFF-C domain) 0.63 49.0 4.89e-01 96.2% 81.9%
2di3A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 47.0 4.85e-01 80.0% 93.3%
2pmiB00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.62 52.0 3.93e-01 96.2% 50.2%
4krdB00 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.62 50.0 3.72e-01 85.0% 50.5%
2xkoA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 47.0 4.47e-01 81.2% 75.5%
3vouB00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.62 42.0 3.54e-01 95.0% 41.2%
3pvuA02 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.62 45.0 4.56e-01 82.5% 77.5%
7pzaA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 45.0 4.43e-01 77.5% 90.7%
3e6mA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 43.0 3.56e-01 73.8% 51.4%
2w9zA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.60 53.0 4.53e-01 98.8% 98.5%
2gauA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 43.0 4.32e-01 76.2% 81.5%
2obpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 44.0 4.43e-01 80.0% 79.0%
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.59 40.0 3.69e-01 70.0% 64.7%
4rocA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.59 46.0 4.30e-01 86.3% 82.5%
1aisB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.59 47.0 4.51e-01 87.5% 86.2%
1g3nC01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.59 51.0 4.47e-01 96.2% 100.0%
1lnwF01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 45.0 3.87e-01 82.5% 75.8%
3of4A00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.58 42.0 3.06e-01 75.0% 55.1%
1ft9A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 42.0 4.28e-01 77.5% 84.8%
1ydxA02 1.10.287.1120 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein 0.57 39.0 3.81e-01 77.5% 63.3%
1c9bA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.57 45.0 4.13e-01 86.3% 76.4%
3nqwA00 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.56 45.0 3.59e-01 91.3% 94.4%
2d6fC03 1.10.150.380 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › GatB domain, N-terminal subdomain 0.56 33.0 4.08e-01 82.5% 92.3%
3p0uA00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.56 48.0 3.58e-01 100.0% 63.5%
1tzvA00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.54 43.0 3.65e-01 88.7% 95.0%
5cbgA00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 39.0 3.70e-01 92.5% 60.8%
1yxrA01 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.53 43.0 4.45e-01 88.7% 100.0%
2a2cA03 1.20.1440.340 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.53 40.0 3.38e-01 81.2% 81.9%
4me3A01 3.30.1640.10 Alpha Beta › 2-Layer Sandwich › mini-chromosome maintenance (MCM) complex, chain A, domain 1 › mini-chromosome maintenance (MCM) complex, chain A, domain 1 0.53 40.0 3.82e-01 82.5% 98.9%
2x3mA00 1.25.40.670 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.52 46.0 3.67e-01 98.8% 69.3%
1zx3A01 1.10.287.1020 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › NE0241-like 0.52 44.0 4.31e-01 88.7% 85.9%
3nz4B03 1.10.274.20 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Phenylalanine ammonia-lyase 1; domain 3 0.51 38.0 3.59e-01 82.5% 88.5%
2pjqA01 1.10.472.50 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like 0.51 38.0 3.71e-01 81.2% 92.1%
4u7iA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.50 42.0 4.08e-01 97.5% 97.8%
3vkgB06 1.20.920.20 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › 0.50 39.0 2.76e-01 82.5% 43.7%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3578154 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.82 55.0 5.26e-01 70.0% 61.1%
None 0.81 56.0 3.98e-01 71.2% 26.4%
4258677 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.81 56.0 3.93e-01 71.2% 25.8%
3964463 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.76 53.0 4.78e-01 75.0% 53.6%
4585396 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.75 53.0 4.13e-01 75.0% 36.3%
3363617 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.74 54.0 5.35e-01 76.2% 71.8%
4197050 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.73 59.0 5.32e-01 85.0% 77.1%
4570076 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.73 54.0 3.65e-01 77.5% 22.5%
4106860 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.72 59.0 5.58e-01 87.5% 83.2%
1296342 101.1.2.456 alpha arrays › HTH › HTH › winged helix domain › HTH_MmpR5 0.72 60.0 4.95e-01 92.5% 91.8%
3671163 101.1.1.267 alpha arrays › HTH › HTH › Three-helical HTH › PF26138 0.72 57.0 5.06e-01 83.7% 85.5%
4489802 101.1.1.251 alpha arrays › HTH › HTH › Three-helical HTH › HTH_ParB 0.72 51.0 5.53e-01 87.5% 92.3%
4437729 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.71 57.0 5.26e-01 85.0% 80.0%
4347676 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.71 56.0 5.42e-01 83.7% 84.4%
4084282 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.71 53.0 5.26e-01 80.0% 74.1%
3961630 101.1.2.456 alpha arrays › HTH › HTH › winged helix domain › HTH_MmpR5 0.71 61.0 4.89e-01 96.2% 85.6%
3383803 101.1.3.12 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › PF26138 0.70 57.0 5.27e-01 87.5% 97.0%
3286591 101.1.2.612 alpha arrays › HTH › HTH › winged helix domain › MarR_2, PF27059 0.69 57.0 4.69e-01 92.5% 66.4%
4595970 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.68 49.0 5.48e-01 81.2% 100.0%
4606821 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.68 56.0 5.21e-01 88.7% 83.0%
4281674 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.67 55.0 5.05e-01 88.7% 73.3%
3971933 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.67 47.0 5.12e-01 75.0% 93.8%
3990437 101.1.10.9 alpha arrays › HTH › HTH › Cyclin-like › Cyclin 0.66 54.0 4.11e-01 86.3% 68.6%
5022467 5054.1.1.8 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 0.66 43.0 3.98e-01 91.3% 53.0%
3577478 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.66 53.0 3.99e-01 85.0% 64.9%
4144334 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.66 46.0 4.18e-01 73.8% 74.5%
3280999 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.66 57.0 4.63e-01 97.5% 67.1%
4958294 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.66 46.0 5.16e-01 80.0% 98.3%
4961104 101.1.2.135 alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.65 46.0 3.73e-01 73.8% 54.0%
4992862 101.1.6.12 alpha arrays › HTH › HTH › TrpR › HTH_23 0.65 44.0 4.52e-01 72.5% 73.3%
4958364 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.65 49.0 4.64e-01 87.5% 67.4%
4947499 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.64 46.0 5.02e-01 73.8% 93.8%
4146099 101.1.6.4 alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C 0.64 53.0 4.99e-01 88.7% 85.3%
3935496 101.1.10.9 alpha arrays › HTH › HTH › Cyclin-like › Cyclin 0.64 52.0 3.95e-01 86.3% 67.2%
5028153 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.63 45.0 4.54e-01 76.2% 77.1%
3253480 101.1.10.9 alpha arrays › HTH › HTH › Cyclin-like › Cyclin 0.63 52.0 3.96e-01 88.7% 78.4%
5078899 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.63 49.0 4.44e-01 83.7% 84.5%
4927193 101.1.10.3 alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.63 48.0 4.45e-01 82.5% 76.2%
3249600 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.63 52.0 4.07e-01 88.7% 89.1%
4977178 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 42.0 4.37e-01 92.5% 74.7%
3602900 5060.2.1.1 alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.62 44.0 3.72e-01 73.8% 60.8%
1839954 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.62 46.0 4.78e-01 80.0% 86.8%
4927767 101.1.1.251 alpha arrays › HTH › HTH › Three-helical HTH › HTH_ParB 0.61 45.0 4.90e-01 83.7% 96.9%
4028884 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.60 46.0 4.18e-01 85.0% 73.0%
4215090 131.1.1.12 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD_4 0.60 49.0 3.65e-01 90.0% 42.9%
3277203 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.59 45.0 3.73e-01 85.0% 52.3%
3641832 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.59 46.0 4.42e-01 86.3% 75.8%
3963064 101.1.1.251 alpha arrays › HTH › HTH › Three-helical HTH › HTH_ParB 0.59 49.0 4.61e-01 93.8% 92.0%
4948165 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.58 47.0 4.25e-01 88.7% 84.5%
3598971 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.58 46.0 3.89e-01 87.5% 59.3%
5053358 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.57 44.0 3.92e-01 86.3% 75.2%
3967251 2004.1.1.514 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23, AAA_29, SbcC_Walker_B 0.57 42.0 2.52e-01 77.5% 11.7%
3239957 2007.2.3.0 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II 0.52 43.0 3.48e-01 96.2% 82.9%