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LC545445.1__BCD83230.1__NrS4_48__00048

Bact-Vir

LC545445.1__BCD83230.1__NrS4_48__00048

Identity

Accession:
LC545445 ↗
Kingdom:
phage

Quality

85.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Nitratiruptor_phage_NrS-4

TaxID: 2725866

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 22-87
PDB
Domain cluster: rep: MK095605.1__AZS06255.1__MED16_gp15__00015__D26-94
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF08809.17 best DUF1799 29.4 1.00e-06 92.4% 66.2%
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3s6jE02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.66 52.0 5.16e-01 93.9% 82.6%
2l2oA00 1.10.10.1540 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Costar domain 0.65 52.0 4.93e-01 93.9% 94.1%
2zhgA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.63 40.0 3.26e-01 74.2% 35.5%
6jgwA01 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.62 37.0 3.03e-01 95.5% 31.4%
7wf8B01 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.61 38.0 3.13e-01 87.9% 33.9%
2fulB00 1.25.40.180 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.60 45.0 3.52e-01 92.4% 35.2%
3gpvA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.59 39.0 3.22e-01 75.8% 39.8%
4jqfA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 47.0 4.60e-01 93.9% 100.0%
1f45B00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.57 40.0 3.17e-01 72.7% 97.7%
1zp2A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.56 46.0 3.99e-01 97.0% 56.2%
3ztvA01 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.56 45.0 2.90e-01 90.9% 85.4%
3lqhA02 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.56 44.0 3.85e-01 89.4% 70.8%
2vx7A00 3.20.20.80 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases 0.54 45.0 2.83e-01 92.4% 16.9%
3sigA00 3.40.220.10 Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 0.54 43.0 2.99e-01 97.0% 23.4%
5grqA00 1.10.8.810 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Daxx helical bundle domain 0.54 38.0 3.48e-01 75.8% 55.6%
1ow4A00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.53 44.0 3.69e-01 95.5% 85.0%
6zhhA01 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.52 43.0 3.20e-01 92.4% 96.7%
1e1hB01 1.20.58.540 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 35.0 3.13e-01 71.2% 93.2%
2oycA02 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.52 33.0 2.80e-01 86.4% 32.8%
2yayA02 1.20.1670.10 Mainly Alpha › Up-down Bundle › all-alpha NTP pyrophosphatase › Type II deoxyuridine triphosphatase 0.52 38.0 3.07e-01 78.8% 68.9%
5ja4D00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.52 41.0 3.21e-01 100.0% 38.3%
2odvA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 44.0 3.70e-01 93.9% 83.9%
1ldjA04 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.50 41.0 3.54e-01 98.5% 55.7%
ECOD (33)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3611776 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.66 45.0 3.51e-01 71.2% 40.0%
143797 101.1.2.149 ↗ alpha arrays › HTH › HTH › winged helix domain › Costars 0.65 52.0 5.01e-01 93.9% 98.8%
3762633 4177.1.1.70 ↗ alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Choline_transpo 0.65 58.0 3.92e-01 100.0% 81.6%
3532393 5050.1.1.6 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › OATP 0.64 56.0 3.69e-01 100.0% 60.4%
3394689 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.63 51.0 4.56e-01 95.5% 89.3%
3614292 7015.1.1.0 ↗ alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain 0.62 43.0 3.15e-01 71.2% 33.5%
3632380 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.62 53.0 3.71e-01 100.0% 70.6%
4660104 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 48.0 4.82e-01 86.4% 95.4%
4282188 5059.1.1.59 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EmrE 0.62 53.0 3.50e-01 100.0% 71.3%
3279318 5069.1.1.2 ↗ alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Ni_hydr_CYTB 0.61 43.0 3.15e-01 74.2% 71.7%
3925084 101.1.1.112 ↗ alpha arrays › HTH › HTH › Three-helical HTH › MADF_DNA_bdg 0.61 51.0 4.47e-01 100.0% 92.7%
3655694 4992.1.1.0 ↗ extended segments › RelB-like › RelB-like › RelB-like 0.59 39.0 3.57e-01 89.4% 52.9%
3170621 3755.3.1.305 ↗ alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin › Rad50_zn_hook 0.59 38.0 3.28e-01 78.8% 41.9%
3605796 541.1.1.0 ↗ alpha duplicates or obligate multimers › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit 0.58 43.0 4.09e-01 77.3% 77.3%
3239087 192.7.1.0 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.58 40.0 3.29e-01 90.9% 41.7%
3598062 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 43.0 3.30e-01 97.0% 34.7%
3736500 321.1.1.5 ↗ a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GCS 0.57 45.0 2.66e-01 90.9% 65.0%
3916642 192.2.1.56 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › KIF9 0.56 39.0 2.94e-01 100.0% 31.3%
3690105 109.4.1.1399 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Tuberin, DUF3384 0.55 49.0 2.72e-01 100.0% 11.5%
282935 3601.1.1.1 ↗ alpha complex topology › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain › Class III adenylyl cyclases regulatory domain › Ad_Cy_reg 0.55 39.0 2.81e-01 75.8% 43.9%
5063358 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 45.0 3.92e-01 97.0% 94.3%
3743349 109.4.1.1253 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_Atp25_C 0.54 42.0 2.94e-01 89.4% 27.8%
4488952 101.1.9.82 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 0.53 37.0 3.16e-01 77.3% 43.6%
3903618 219.1.1.54 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C98 0.53 39.0 2.54e-01 77.3% 34.1%
4068922 622.4.1.0 ↗ alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related 0.53 47.0 4.04e-01 100.0% 92.4%
4979528 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.53 40.0 3.51e-01 80.3% 70.5%
3558124 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.53 36.0 3.98e-01 72.7% 96.0%
2754509 267.1.1.3 ↗ a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.52 43.0 3.12e-01 92.4% 87.4%
3993680 4957.1.1.0 ↗ a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit 0.52 45.0 3.66e-01 100.0% 57.7%
3774441 109.4.1.846 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Stereocilin 0.52 46.0 2.50e-01 100.0% 45.9%
1827815 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.51 36.0 3.64e-01 72.7% 75.0%
3697304 109.4.1.681 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans_2 0.51 41.0 2.60e-01 95.5% 46.7%
3201554 150.1.1.98 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Vwaint 0.51 39.0 3.36e-01 89.4% 83.3%