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LC545445.1__BCD83232.1__NrS4_50__00050

Bact-Vir

LC545445.1__BCD83232.1__NrS4_50__00050

Identity

Accession:
LC545445 ↗
Kingdom:
phage

Quality

84.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-96
PDB
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3o2iA00 3.30.70.2710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 36.0 3.71e-01 97.9% 73.1%
2qlzA02 6.10.250.2960 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.52 35.0 3.69e-01 91.6% 75.6%
1cb8A02 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.52 41.0 3.07e-01 85.3% 79.7%
2hj1A00 3.10.20.280 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like 0.52 24.0 2.70e-01 72.6% 53.2%
3dmgA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.50 43.0 3.47e-01 100.0% 47.9%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4110715 64.3.1.1 beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 0.78 48.0 6.05e-01 84.2% 100.0%
D2 high residues 125-134_215-279
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1pgsA02 2.60.120.230 Mainly Beta › Sandwich › Jelly Rolls › 0.60 54.0 4.12e-01 100.0% 64.6%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4108164 604.27.1.4 alpha bundles › Spectrin repeat-like › Triple-helical domain in insecticidal protein Cry1Ac › Triple-helical domain in insecticidal protein Cry1Ac › Cry1Ac_D5 0.62 55.0 3.68e-01 100.0% 37.6%
D3 high residues 141-208
PDB
D4 high residues 281-387
PDB
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2rjzA02 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.69 50.0 5.16e-01 100.0% 80.8%
1k28D03 2.40.30.150 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 0.68 52.0 5.48e-01 100.0% 91.6%
4divV01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.66 58.0 5.40e-01 100.0% 86.9%
6tmfM00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.56 40.0 4.13e-01 92.5% 79.4%
6toaF01 3.30.2000.30 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.56 51.0 4.76e-01 100.0% 91.5%
2xzmJ00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.55 40.0 4.05e-01 89.7% 78.1%
4hudA01 3.30.2000.40 Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser 0.55 49.0 3.95e-01 100.0% 72.4%
2d73A01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.54 45.0 3.42e-01 94.4% 75.7%
2l25A00 3.30.2000.20 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.53 48.0 4.37e-01 100.0% 87.9%
4puxA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.52 37.0 3.30e-01 72.9% 100.0%
3byqA00 3.30.1330.110 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › BB2672 0.51 46.0 3.80e-01 99.1% 87.4%
1nbwA02 3.90.470.30 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Coenzyme B12-Dependent Enzyme linker domain 0.51 40.0 3.70e-01 85.0% 96.5%
1k8wA01 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.51 44.0 3.40e-01 94.4% 53.9%
3fz2A00 3.30.70.1700 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phage minor tail protein U 0.51 46.0 4.38e-01 100.0% 90.6%
7n0eB02 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.50 36.0 3.49e-01 100.0% 65.6%
6h9xA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.50 40.0 2.83e-01 85.0% 86.2%
3ko2A00 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.50 35.0 3.11e-01 100.0% 49.1%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3981654 1.1.13.40 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_min_tail 0.72 66.0 6.59e-01 100.0% 96.4%
3980535 1.1.13.51 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_P2_GpU 0.70 64.0 5.91e-01 100.0% 85.9%
3580020 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.69 62.0 5.13e-01 100.0% 71.8%
3943681 1.1.13.47 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_like 0.69 64.0 5.69e-01 100.0% 82.7%
4033579 1.1.13.4 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.67 60.0 5.72e-01 100.0% 93.6%
1444177 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.66 59.0 5.46e-01 100.0% 87.5%
4888732 1.1.13.4 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Sipho_tail 0.64 57.0 5.09e-01 100.0% 75.0%
3958972 512.1.1.0 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.64 33.0 3.48e-01 96.3% 54.7%
4947221 512.1.1.0 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.64 32.0 3.47e-01 95.3% 56.7%
2595159 1.1.13.6 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.62 56.0 4.88e-01 100.0% 68.7%
5075687 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.62 32.0 3.54e-01 96.3% 61.2%
5014259 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.62 31.0 3.45e-01 96.3% 60.0%
4966228 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.61 31.0 3.65e-01 96.3% 69.3%
4935003 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.61 31.0 3.65e-01 96.3% 69.3%
3570520 306.10.1.4 a+b two layers › Glucose permease domain IIB-like › H1 domain of KCTD12 › H1 domain of KCTD12 › KCTD11_21_C 0.61 44.0 4.01e-01 96.3% 55.2%
2642579 1.1.13.6 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.60 54.0 5.09e-01 100.0% 87.7%
4888726 1.1.13.6 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.60 54.0 4.71e-01 100.0% 69.5%
5011023 512.1.1.0 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.59 32.0 3.65e-01 95.3% 68.8%
5055109 512.1.1.0 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.59 33.0 3.58e-01 96.3% 64.4%
5001314 304.102.1.4 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N 0.58 44.0 3.40e-01 81.3% 65.7%
4873215 1.1.13.11 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF2001 0.58 52.0 4.74e-01 100.0% 82.1%
5860 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.58 32.0 3.05e-01 97.2% 43.9%
4979861 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.57 32.0 3.14e-01 96.3% 48.7%
4943359 304.102.1.13 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_C_2 0.57 43.0 3.43e-01 82.2% 68.5%
4979863 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.56 32.0 3.43e-01 96.3% 64.4%
5074003 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.56 33.0 3.27e-01 97.2% 52.2%
5033279 304.102.1.4 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N 0.56 45.0 3.51e-01 86.9% 68.8%
5073696 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.56 31.0 3.08e-01 95.3% 50.0%
3190573 706.2.1.0 beta complex topology › Head domain of nucleotide exchange factor GrpE › G5 and E repeats in surface protein G › G5 and E repeats in surface protein G 0.56 30.0 3.96e-01 94.4% 100.0%
4935004 512.1.1.0 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.56 31.0 2.99e-01 96.3% 44.8%
3285688 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.56 32.0 3.35e-01 97.2% 61.1%
4978348 512.1.1.0 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.55 31.0 3.39e-01 96.3% 65.9%
3285689 512.1.1.0 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.55 30.0 3.17e-01 95.3% 55.0%
5011027 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.55 32.0 2.77e-01 97.2% 34.3%
4971337 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.55 31.0 3.45e-01 99.1% 68.2%
5013600 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.55 32.0 3.04e-01 97.2% 46.2%
4994607 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.54 32.0 3.20e-01 99.1% 53.9%
4971338 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.54 33.0 3.27e-01 96.3% 57.3%
5073160 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.54 33.0 3.16e-01 99.1% 50.0%
4557453 304.102.1.9 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N, DKCLD, TruB_C_2, Pus10_C 0.53 43.0 3.33e-01 93.5% 38.4%
4275176 304.102.1.5 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,DKCLD,TruB_C_2 0.53 42.0 3.37e-01 93.5% 40.9%
4941441 512.1.1.0 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.53 31.0 3.00e-01 99.1% 49.2%
5010248 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.52 28.0 3.15e-01 97.2% 66.3%
4944562 512.1.1.5 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_3rd 0.51 29.0 2.93e-01 96.3% 50.9%
70450 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.51 31.0 2.97e-01 97.2% 50.4%
4956104 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.51 29.0 2.95e-01 97.2% 51.8%
4977671 304.102.1.0 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase 0.51 41.0 3.61e-01 94.4% 58.7%
4956107 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.51 31.0 3.05e-01 99.1% 54.2%
5071837 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.50 30.0 2.82e-01 99.1% 45.0%
5076771 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.50 31.0 3.09e-01 98.1% 59.1%
5064236 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.50 31.0 3.04e-01 96.3% 54.8%
5079051 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.50 30.0 2.93e-01 97.2% 50.8%