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LC545445.1__BCD83234.1__NrS4_52__00052

Bact-Vir

LC545445.1__BCD83234.1__NrS4_52__00052

Identity

Accession:
LC545445 ↗
Kingdom:
phage

Quality

82.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Nitratiruptor_phage_NrS-4

TaxID: 2725866

Cluster

View cluster (23 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 20-136_217-231
PDB
Domain cluster: rep: KM199771.1__AIK68527.1__Lo5R7ANS_57__00057__D358-488_526-544
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF21722.5 best Gly_rich_2 36.1 1.00e-08 90.9% 54.0%
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4yrdA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.68 34.0 3.59e-01 100.0% 52.1%
2xskA00 2.60.40.2420 Mainly Beta › Sandwich › Immunoglobulin-like › 0.65 41.0 4.76e-01 97.7% 88.4%
1o5uA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.64 29.0 3.46e-01 100.0% 60.2%
1lr5B00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.64 33.0 3.16e-01 100.0% 40.9%
5by5A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.62 29.0 3.12e-01 100.0% 47.8%
2gu9A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 34.0 3.78e-01 100.0% 75.7%
2q7nA05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 36.0 4.09e-01 98.5% 86.7%
5j7mA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.56 33.0 3.40e-01 100.0% 61.5%
2qjvA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.55 35.0 3.74e-01 100.0% 73.5%
1l9nA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 40.0 4.26e-01 98.5% 86.8%
4iihB04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 34.0 3.74e-01 90.9% 76.6%
7uzsX03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 40.0 4.26e-01 99.2% 87.0%
4yarA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 31.0 3.27e-01 100.0% 61.0%
1xjaB00 2.60.120.280 Mainly Beta › Sandwich › Jelly Rolls › Regulatory protein AraC 0.52 32.0 3.10e-01 100.0% 52.6%
1g0dA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 36.0 3.92e-01 96.2% 87.3%
4i3gA03 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.51 39.0 4.31e-01 100.0% 98.1%
3afgA03 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.50 36.0 4.02e-01 99.2% 96.1%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2149195 10.12.1.0 ↗ beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix 0.63 29.0 2.69e-01 100.0% 31.4%
4029295 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 34.0 3.81e-01 93.2% 70.0%
5013355 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.59 37.0 4.52e-01 97.7% 97.6%
5012588 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.58 35.0 4.41e-01 97.7% 98.8%
5035506 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 35.0 3.95e-01 93.9% 81.1%
4411709 11.1.1.17 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Transglut_C 0.56 41.0 4.39e-01 99.2% 87.0%
4978630 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.53 39.0 4.40e-01 95.5% 99.0%
4473095 11.1.1.1213 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF27624 0.53 35.0 3.96e-01 99.2% 89.0%
3280259 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 32.0 3.81e-01 97.0% 96.4%
3597620 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 31.0 3.03e-01 100.0% 52.0%
3512330 10.32.1.176 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF3672 0.52 45.0 4.55e-01 99.2% 94.1%
3250421 11.1.1.798 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_TPPC8_1st 0.51 35.0 3.44e-01 93.2% 63.4%
5047632 10.1.2.183 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › PPC 0.51 37.0 4.03e-01 98.5% 90.0%
5027060 5095.1.1.1 ↗ beta sandwiches › N-terminal beta-sandwich domain in anthrax protective antigen › N-terminal beta-sandwich domain in anthrax protective antigen › N-terminal beta-sandwich domain in anthrax protective antigen › PA14 0.51 38.0 3.86e-01 97.0% 78.5%
D2 medium residues 137-216
PDB
Domain cluster: representative