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LC545446.1__BCD83251.1__NrS5_10__00010
Bact-VirLC545446.1__BCD83251.1__NrS5_10__00010
Identity
- Accession:
- LC545446 ↗
- Kingdom:
- phage
Quality
87.1
mean pLDDT
Cluster
View cluster (36 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 45-95
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3gw6D02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.66 | 48.0 | 3.52e-01 | 84.3% | 28.6% |
| 2iieA01 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.64 | 54.0 | 4.23e-01 | 100.0% | 44.4% |
| 1owfA00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.62 | 52.0 | 4.23e-01 | 100.0% | 50.0% |
| 1av4A03 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.61 | 49.0 | 2.94e-01 | 94.1% | 35.6% |
| 5axmB00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.61 | 46.0 | 3.07e-01 | 88.2% | 67.4% |
| 4n1vA00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.61 | 49.0 | 4.06e-01 | 100.0% | 49.5% |
| 1se8A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.60 | 44.0 | 3.65e-01 | 90.2% | 39.6% |
| 1ue6D00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.59 | 39.0 | 3.22e-01 | 88.2% | 33.7% |
| 2ndpA00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.58 | 48.0 | 3.94e-01 | 100.0% | 48.5% |
| 5aj3Q00 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 48.0 | 3.80e-01 | 100.0% | 54.1% |
| 3j7aV00 | 2.40.50.1000 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.56 | 47.0 | 3.48e-01 | 100.0% | 40.4% |
| 1f8vC00 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 44.0 | 2.82e-01 | 96.1% | 41.5% |
| 4yg6B00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 46.0 | 3.22e-01 | 94.1% | 34.4% |
| 2np2A00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.55 | 45.0 | 3.71e-01 | 100.0% | 48.0% |
| 3s7vC00 | 2.60.175.10 | Mainly Beta › Sandwich › Polyomavirus Vp1; Chain A › Capsid protein VP1,Polyomavirus | 0.55 | 37.0 | 2.46e-01 | 76.5% | 96.3% |
| 4q52A00 | 2.60.40.3910 | Mainly Beta › Sandwich › Immunoglobulin-like › Inclusion body protein | 0.54 | 40.0 | 2.98e-01 | 90.2% | 32.0% |
| 3ub1A01 | 3.10.450.540 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.54 | 45.0 | 3.37e-01 | 96.1% | 38.2% |
| 3urgA02 | 2.30.30.530 | Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain | 0.53 | 33.0 | 3.09e-01 | 90.2% | 47.6% |
| 4bwiB02 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.53 | 41.0 | 3.05e-01 | 100.0% | 55.1% |
| 1h6eA02 | 2.60.40.1170 | Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B | 0.53 | 44.0 | 3.53e-01 | 96.1% | 80.0% |
| 2lxxA00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.53 | 43.0 | 3.23e-01 | 100.0% | 54.6% |
| 3c3vA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.53 | 45.0 | 2.93e-01 | 100.0% | 52.3% |
| 6lmjB00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.53 | 44.0 | 3.66e-01 | 100.0% | 61.2% |
| 3goxA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 31.0 | 3.13e-01 | 94.1% | 51.0% |
| 4l8nA03 | 3.30.160.670 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 41.0 | 3.08e-01 | 100.0% | 53.7% |
| 2ihmB03 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.52 | 36.0 | 3.00e-01 | 94.1% | 35.1% |
| 1jb7A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 40.0 | 2.95e-01 | 100.0% | 46.6% |
| 1ciiA02 | 3.30.305.10 | Alpha Beta › 2-Layer Sandwich › Colicin Ia; domain 2 › Colicin Ia; domain 2 | 0.50 | 37.0 | 3.10e-01 | 84.3% | 96.0% |
| 3o0lA00 | 2.60.40.3230 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 40.0 | 3.31e-01 | 98.0% | 66.1% |
ECOD (43)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3957104 | 11.13.1.3 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Leukocidin-like › Leukocidin-like › MspA | 0.75 | 59.0 | 3.98e-01 | 86.3% | 23.2% |
| 3738677 | 4186.1.1.1 ↗ | beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p | 0.68 | 57.0 | 4.49e-01 | 100.0% | 69.5% |
| 3387999 | 2003.2.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Formate dehydrogenase/DMSO reductase, domains 2 and 3 | 0.68 | 50.0 | 3.30e-01 | 80.4% | 19.5% |
| 3421099 | 225.1.1.2 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › HSP90,HATPase_c_3 | 0.67 | 49.0 | 3.13e-01 | 80.4% | 71.7% |
| 3601924 | 511.1.1.0 ↗ | beta sandwiches › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain › Heat shock protein 70kD (HSP70), peptide-binding domain | 0.66 | 54.0 | 3.81e-01 | 96.1% | 40.0% |
| 5019455 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.64 | 48.0 | 3.34e-01 | 86.3% | 29.7% |
| 4575287 | 4186.1.1.1 ↗ | beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p | 0.64 | 54.0 | 4.26e-01 | 100.0% | 78.8% |
| 4493293 | 4186.1.1.1 ↗ | beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p | 0.63 | 53.0 | 4.28e-01 | 100.0% | 70.9% |
| 3789364 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.63 | 53.0 | 3.18e-01 | 100.0% | 32.7% |
| 4024275 | 4186.1.1.1 ↗ | beta barrels › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal protein L21p › Ribosomal_L21p | 0.63 | 53.0 | 4.16e-01 | 100.0% | 68.7% |
| 4997345 | 3435.1.1.0 ↗ | a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC | 0.62 | 50.0 | 3.94e-01 | 100.0% | 40.0% |
| 4026355 | 304.109.1.1 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 | 0.61 | 50.0 | 4.26e-01 | 100.0% | 63.2% |
| 3563069 | 1086.1.1.5 ↗ | beta meanders › C-terminal beta-hairpin in astrotactin-2 › C-terminal beta-hairpin in astrotactin-2 › C-terminal beta-hairpin in astrotactin-2 › EMI | 0.60 | 42.0 | 4.43e-01 | 78.4% | 84.4% |
| 4168202 | 101.17.1.0 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins | 0.59 | 52.0 | 4.31e-01 | 100.0% | 60.2% |
| 4965661 | 327.7.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › FKBP26_C | 0.58 | 44.0 | 3.86e-01 | 86.3% | 58.8% |
| 5055242 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 47.0 | 4.07e-01 | 90.2% | 81.2% |
| 4108127 | 101.17.1.1 ↗ | alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins › Bac_DNA_binding | 0.57 | 49.0 | 3.95e-01 | 100.0% | 51.6% |
| 4064510 | 325.1.7.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif | 0.56 | 37.0 | 2.90e-01 | 84.3% | 28.8% |
| 3657432 | 220.1.1.205 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_PHS1 | 0.56 | 47.0 | 3.57e-01 | 98.0% | 75.2% |
| 3915702 | 3426.1.1.1 ↗ | beta meanders › Telethonin › Telethonin › Telethonin › Telethonin | 0.56 | 47.0 | 4.01e-01 | 100.0% | 71.1% |
| 4983372 | 304.48.1.20 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Thg1 | 0.56 | 41.0 | 2.78e-01 | 88.2% | 71.6% |
| 5078099 | 304.51.1.7 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR_Cas6 | 0.55 | 42.0 | 3.03e-01 | 86.3% | 47.5% |
| 3485401 | 59.1.1.0 ↗ | beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like | 0.55 | 47.0 | 3.43e-01 | 98.0% | 54.5% |
| 4945859 | 230.1.1.5 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 | 0.55 | 44.0 | 3.46e-01 | 100.0% | 74.6% |
| 4882343 | 2003.1.1.59 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_5 | 0.55 | 41.0 | 2.55e-01 | 92.2% | 13.0% |
| 3746028 | 5089.1.1.3 ↗ | beta complex topology › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Gasdermin | 0.54 | 41.0 | 2.79e-01 | 90.2% | 27.2% |
| 4461237 | 4967.1.1.0 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases | 0.54 | 39.0 | 2.30e-01 | 82.4% | 47.4% |
| 4096635 | 2484.1.1.308 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › TNP-like_RNaseH_N, TNP-like_RNaseH_C | 0.54 | 41.0 | 2.59e-01 | 86.3% | 14.8% |
| 4385584 | 327.13.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ring-building motif I in type III secretion system › Ring-building motif I in type III secretion system › YscJ_FliF_C | 0.54 | 39.0 | 2.90e-01 | 86.3% | 28.8% |
| 3587268 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.54 | 42.0 | 3.42e-01 | 98.0% | 92.5% |
| 3612182 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 39.0 | 3.39e-01 | 84.3% | 51.1% |
| 3717723 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.53 | 44.0 | 3.56e-01 | 94.1% | 71.0% |
| 4993382 | 242.1.1.7 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 | 0.53 | 42.0 | 3.54e-01 | 92.2% | 52.6% |
| 4174762 | 301.2.1.4 ↗ | a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › FGAR-AT_linker | 0.52 | 38.0 | 2.62e-01 | 86.3% | 68.9% |
| 3495218 | 922.1.1.9 ↗ | few secondary structure elements › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP-1 type 1 repeat › TSP1_2 | 0.52 | 40.0 | 4.06e-01 | 96.1% | 92.0% |
| 3459328 | 148.1.1.0 ↗ | alpha arrays › Histone-like › Histone-related › Histone | 0.51 | 40.0 | 3.48e-01 | 96.1% | 69.5% |
| 4950334 | 282.1.1.1 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS | 0.51 | 38.0 | 2.52e-01 | 88.2% | 71.1% |
| 3397415 | 223.1.1.69 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › VWA_N | 0.51 | 39.0 | 2.87e-01 | 98.0% | 36.8% |
| 5018976 | 295.1.1.53 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › DUF3467 | 0.51 | 36.0 | 3.47e-01 | 92.2% | 65.1% |
| 3925480 | 5052.1.1.1 ↗ | alpha complex topology › Proton glutamate symport protein › Proton glutamate symport protein › Proton glutamate symport protein › SDF | 0.51 | 39.0 | 2.36e-01 | 96.1% | 14.3% |
| 2841854 | 265.1.1.1 ↗ | a+b two layers › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › RNA bacteriophage capsid protein › Levi_coat | 0.51 | 40.0 | 3.15e-01 | 98.0% | 40.2% |
| 4239077 | 9.26.1.0 ↗ | beta barrels › Lipocalins/Streptavidin | 0.50 | 41.0 | 3.00e-01 | 94.1% | 60.7% |
| 4510736 | 11.1.1.640 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ZP-N | 0.50 | 41.0 | 3.18e-01 | 100.0% | 50.0% |