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LC553736.1__BCG45170.1__X__00007
Bact-VirLC553736.1__BCG45170.1__X__00007
Identity
- Accession:
- LC553736 ↗
- Kingdom:
- phage
Quality
73.4
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Casjensviridae›
Zhonglingvirus›
Salmonella_phage_SAP012
TaxID: 2742114
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-59
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4msxA01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.68 | 52.0 | 4.47e-01 | 100.0% | 51.6% |
| 4hn3A00 | 3.10.570.10 | Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain | 0.67 | 58.0 | 3.64e-01 | 98.2% | 34.3% |
| 3gv4A00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.67 | 50.0 | 4.28e-01 | 100.0% | 48.5% |
| 2a90A02 | 3.30.720.50 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.65 | 43.0 | 4.21e-01 | 71.9% | 63.9% |
| 2g43B01 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.61 | 52.0 | 4.44e-01 | 100.0% | 62.2% |
| 1wp0A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.60 | 42.0 | 3.10e-01 | 73.7% | 60.0% |
| 3i3wA03 | 3.40.120.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 | 0.60 | 51.0 | 4.53e-01 | 94.7% | 73.2% |
| 2vugA02 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.59 | 45.0 | 4.30e-01 | 87.7% | 73.6% |
| 3w20A00 | 2.60.120.620 | Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain | 0.59 | 48.0 | 3.23e-01 | 96.5% | 94.9% |
| 4bpuC00 | 3.90.920.10 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain | 0.59 | 49.0 | 3.08e-01 | 100.0% | 85.8% |
| 3l2pA02 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.57 | 43.0 | 4.12e-01 | 86.0% | 73.2% |
| 1wh2A01 | 3.30.1490.40 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain | 0.57 | 44.0 | 4.38e-01 | 100.0% | 85.2% |
| 3ooqF01 | 2.30.40.10 | Mainly Beta › Roll › Urease, subunit C; domain 1 › Urease, subunit C, domain 1 | 0.57 | 39.0 | 3.33e-01 | 100.0% | 43.6% |
| 3zgzD04 | 2.20.28.290 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.56 | 39.0 | 3.82e-01 | 73.7% | 83.9% |
| 1h3dA03 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 38.0 | 3.66e-01 | 71.9% | 95.5% |
| 5u3fA02 | 3.20.10.10 | Alpha Beta › Alpha-Beta Barrel › D-amino Acid Aminotransferase; Chain A, domain 2 › D-amino Acid Aminotransferase, subunit A, domain 2 | 0.55 | 45.0 | 3.20e-01 | 93.0% | 31.0% |
| 2k6vA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.55 | 38.0 | 2.77e-01 | 73.7% | 54.1% |
| 4chkB00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.55 | 38.0 | 3.31e-01 | 75.4% | 46.2% |
| 4d05A01 | 3.30.1490.70 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › | 0.55 | 45.0 | 4.17e-01 | 96.5% | 73.7% |
| 2hlcA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.55 | 45.0 | 3.87e-01 | 100.0% | 75.0% |
| 7c2fB01 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.54 | 46.0 | 4.13e-01 | 100.0% | 90.7% |
| 1g8lA04 | 2.40.340.10 | Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV | 0.53 | 39.0 | 3.74e-01 | 84.2% | 83.8% |
| 2jz6A01 | 2.30.170.40 | Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L28/L24 | 0.53 | 35.0 | 3.67e-01 | 100.0% | 78.0% |
| 2abjD02 | 3.20.10.10 | Alpha Beta › Alpha-Beta Barrel › D-amino Acid Aminotransferase; Chain A, domain 2 › D-amino Acid Aminotransferase, subunit A, domain 2 | 0.53 | 43.0 | 3.09e-01 | 93.0% | 74.9% |
| 2zplB00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.53 | 43.0 | 3.83e-01 | 100.0% | 69.1% |
| 2m88A01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.52 | 35.0 | 3.21e-01 | 73.7% | 51.2% |
| 4gxbA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.52 | 42.0 | 3.67e-01 | 96.5% | 89.7% |
| 1wvqA00 | 3.40.1520.10 | Alpha Beta › 3-Layer(aba) Sandwich › hypothetical protein tt1634 › Ta1353-like | 0.50 | 42.0 | 3.07e-01 | 94.7% | 84.0% |
ECOD (35)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3612662 | 376.1.1.5 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP | 0.70 | 54.0 | 4.15e-01 | 100.0% | 36.9% |
| 3598956 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.70 | 54.0 | 4.84e-01 | 100.0% | 60.0% |
| 3890381 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.68 | 42.0 | 3.78e-01 | 71.9% | 45.0% |
| 3886750 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.67 | 41.0 | 3.98e-01 | 71.9% | 55.6% |
| 4212763 | 7.1.1.1 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ | 0.67 | 50.0 | 4.37e-01 | 87.7% | 54.1% |
| 3846535 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.66 | 45.0 | 3.94e-01 | 71.9% | 77.8% |
| 3617714 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.66 | 41.0 | 3.75e-01 | 71.9% | 48.0% |
| 4322608 | 7.1.1.10 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 | 0.66 | 49.0 | 4.33e-01 | 87.7% | 54.1% |
| 3581513 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.65 | 40.0 | 3.60e-01 | 71.9% | 45.0% |
| 4981662 | 821.1.1.14 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF2797 | 0.64 | 50.0 | 4.44e-01 | 87.7% | 100.0% |
| 3911194 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.64 | 40.0 | 3.58e-01 | 71.9% | 45.0% |
| 3739044 | 376.1.1.32 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP_var | 0.64 | 52.0 | 4.30e-01 | 100.0% | 49.1% |
| 3484139 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.63 | 51.0 | 4.01e-01 | 100.0% | 41.6% |
| 3746817 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.63 | 42.0 | 3.91e-01 | 70.2% | 92.0% |
| 3711220 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.63 | 38.0 | 3.64e-01 | 71.9% | 52.3% |
| 4946939 | 862.1.1.1 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S | 0.63 | 52.0 | 3.71e-01 | 100.0% | 89.5% |
| 4974123 | 821.1.1.14 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF2797 | 0.63 | 50.0 | 4.24e-01 | 91.2% | 96.0% |
| 4557647 | 11.1.1.59 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CagX | 0.62 | 48.0 | 3.71e-01 | 93.0% | 37.0% |
| 3242250 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.61 | 45.0 | 3.67e-01 | 80.7% | 50.0% |
| 3513328 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.61 | 39.0 | 3.69e-01 | 71.9% | 52.9% |
| 3800967 | 4357.1.1.0 ↗ | beta barrels › WWE domain › WWE domain › WWE domain | 0.59 | 40.0 | 3.86e-01 | 71.9% | 98.6% |
| 3412180 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.59 | 50.0 | 2.98e-01 | 100.0% | 20.6% |
| 3628468 | 822.1.1.1 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF | 0.57 | 43.0 | 4.11e-01 | 100.0% | 69.3% |
| 3880308 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.56 | 39.0 | 3.53e-01 | 73.7% | 73.8% |
| 3295690 | 822.1.1.2 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 | 0.56 | 45.0 | 4.45e-01 | 100.0% | 84.6% |
| 4946669 | 4045.1.1.1 ↗ | a+b two layers › barrel domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › barrel domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › barrel domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › Aminotran_4 | 0.55 | 45.0 | 3.17e-01 | 93.0% | 66.8% |
| 3574017 | 822.1.1.2 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 | 0.55 | 45.0 | 4.29e-01 | 98.2% | 84.3% |
| 3930342 | 822.1.1.2 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 | 0.55 | 43.0 | 4.40e-01 | 100.0% | 98.2% |
| 3323677 | 822.1.1.2 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 | 0.54 | 44.0 | 4.41e-01 | 100.0% | 91.7% |
| 5030835 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.54 | 42.0 | 3.81e-01 | 91.2% | 71.8% |
| 4027964 | 7579.1.1.42 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Hydrolase_4 | 0.54 | 39.0 | 2.51e-01 | 80.7% | 36.4% |
| 4024679 | 822.1.1.1 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF | 0.53 | 43.0 | 4.31e-01 | 100.0% | 100.0% |
| 3970970 | 70.1.1.1 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like › MoeA_C | 0.53 | 42.0 | 4.02e-01 | 98.2% | 74.7% |
| 5074679 | 301.9.1.1 ↗ | a+b three layers › Bacillus chorismate mutase-like › HypA Ni-binding domain › HypA Ni-binding domain › HypA | 0.51 | 37.0 | 2.95e-01 | 78.9% | 93.1% |
| 5031060 | 2.1.1.32 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TIP49 | 0.50 | 42.0 | 3.48e-01 | 100.0% | 81.7% |
D2
high
residues 90-159
Domain cluster:
rep: ON146294.1__URG13002.1__B2_9__00009__D7-62
D3
high
residues 168-232
Domain cluster:
rep: ON146294.1__URG13002.1__B2_9__00009__D7-62