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LC554890.1__BCG50070.1__X__00052

Bact-Vir

LC554890.1__BCG50070.1__X__00052

Identity

Accession:
LC554890 ↗
Kingdom:
phage

Quality

84.7 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-89
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04717.19 best Phage_base_V 28.7 1.90e-06 97.3% 81.3%
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1wthA01 2.40.50.260 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding protein domain 0.89 83.0 6.82e-01 100.0% 74.0%
4uhvA04 2.40.50.230 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Gp5 N-terminal domain 0.83 77.0 6.74e-01 100.0% 80.6%
2exdA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.77 54.0 5.40e-01 100.0% 71.6%
3qr8A01 2.40.50.230 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Gp5 N-terminal domain 0.77 67.0 6.36e-01 100.0% 81.0%
3zjyC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.77 60.0 5.98e-01 100.0% 81.1%
1u0lA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.77 61.0 6.52e-01 100.0% 96.9%
1v43A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.76 49.0 5.27e-01 86.3% 76.6%
2k5nA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.73 59.0 5.94e-01 100.0% 86.5%
1t9hA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.73 59.0 5.94e-01 100.0% 87.7%
2bh8B01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.71 50.0 5.63e-01 83.6% 98.2%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 38.0 3.85e-01 100.0% 50.7%
3pqiA01 2.40.50.230 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Gp5 N-terminal domain 0.69 62.0 6.02e-01 100.0% 98.8%
3aqqA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 57.0 5.15e-01 100.0% 66.7%
4rg1A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.68 52.0 5.52e-01 100.0% 92.3%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.67 50.0 5.22e-01 91.8% 86.6%
3amuA02 2.40.50.1010 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.65 58.0 4.75e-01 100.0% 63.2%
1eujA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 58.0 4.46e-01 100.0% 51.2%
3d0fA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 57.0 5.76e-01 98.6% 95.9%
1smxA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.65 56.0 5.33e-01 97.3% 92.0%
2qcpX01 2.40.50.320 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Copper binding periplasmic protein CusF 0.64 55.0 5.47e-01 100.0% 94.7%
1iyjB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 57.0 4.90e-01 100.0% 74.6%
3u4zA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 55.0 4.89e-01 100.0% 71.6%
1b7yB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 57.0 4.84e-01 100.0% 78.4%
2asbA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 53.0 5.28e-01 97.3% 96.0%
4hn7A00 2.40.50.650 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 44.0 4.28e-01 97.3% 67.1%
3kf8B00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 54.0 4.61e-01 100.0% 60.8%
2zxrA01 2.40.50.460 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 49.0 3.89e-01 100.0% 43.0%
2nttA02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 48.0 4.88e-01 100.0% 95.7%
1v1pB02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 50.0 4.98e-01 100.0% 94.6%
1p16B02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.59 51.0 4.28e-01 100.0% 61.7%
4rfbA02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 50.0 4.96e-01 100.0% 96.0%
4pz7A01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.57 50.0 4.12e-01 100.0% 59.1%
2k5wA00 2.40.50.480 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Protein of unknown function DUF1093 0.55 47.0 4.21e-01 100.0% 73.0%
3lnnA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.52 39.0 3.74e-01 87.7% 100.0%
2j8zA01 3.90.180.10 Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain 0.52 41.0 3.17e-01 91.8% 58.1%
3hkzG00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 43.0 3.80e-01 100.0% 97.3%
3qwmA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 36.0 3.09e-01 78.1% 48.8%
ECOD (73)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995814 2.7.1.1 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V 0.92 86.0 6.46e-01 100.0% 50.6%
4888815 2.7.1.2 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Gp5_OB 0.90 84.0 6.70e-01 100.0% 67.9%
5003246 2.7.1.1 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V 0.85 79.0 6.11e-01 100.0% 50.0%
None 0.84 78.0 7.04e-01 100.0% 87.4%
4413978 79.1.1.0 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.83 77.0 5.11e-01 100.0% 31.9%
3967453 2.7.1.1 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V 0.83 76.0 6.94e-01 100.0% 87.4%
3946740 2.7.1.1 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V 0.81 70.0 6.52e-01 100.0% 75.6%
340101 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.80 62.0 6.42e-01 100.0% 88.4%
5058911 2.7.1.0 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N 0.80 74.0 6.33e-01 100.0% 72.7%
1731165 2.7.1.1 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V 0.79 68.0 6.36e-01 100.0% 76.4%
4935688 2.1.1.11 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-1a 0.78 63.0 5.61e-01 100.0% 63.0%
2468517 2.7.1.1 beta barrels › OB-fold › Tail-associated lysozyme gp5-N › Tail-associated lysozyme gp5-N › Phage_base_V 0.77 70.0 5.22e-01 100.0% 42.7%
4083610 2.1.1.100 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM_2 0.74 60.0 6.31e-01 98.6% 96.9%
3629514 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.72 56.0 5.44e-01 100.0% 76.2%
4461636 2.1.1.100 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM_2 0.72 58.0 6.03e-01 97.3% 92.8%
3944153 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.72 49.0 4.24e-01 87.7% 47.3%
1509336 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.71 51.0 5.18e-01 91.8% 75.3%
4070089 2.1.1.100 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM_2 0.71 58.0 5.85e-01 97.3% 87.7%
4301110 2.1.1.100 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM_2 0.71 58.0 6.11e-01 95.9% 100.0%
4996015 2.1.1.365 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RNase_E_G 0.71 56.0 4.35e-01 98.6% 40.0%
4509161 2002.1.1.0 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.71 58.0 3.70e-01 97.3% 19.2%
4281449 2.4.1.3 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2,OB_MalK 0.71 50.0 4.11e-01 91.8% 42.2%
3166329 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.70 51.0 4.28e-01 91.8% 46.7%
3988584 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.70 51.0 4.56e-01 91.8% 56.0%
185474 2.1.1.96 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Gp138_N 0.70 63.0 5.94e-01 100.0% 94.3%
3702421 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 62.0 5.39e-01 98.6% 70.0%
4983129 2.1.1.109 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RRP4_S1 0.68 62.0 5.90e-01 100.0% 91.8%
3594168 2.1.1.16 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_bind 0.68 61.0 4.50e-01 100.0% 54.2%
3599542 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 60.0 5.26e-01 98.6% 80.0%
4382135 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.68 47.0 4.11e-01 91.8% 48.2%
3992385 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.67 58.0 5.69e-01 100.0% 86.3%
4246088 2.1.1.100 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TRAM_2 0.67 55.0 5.67e-01 98.6% 94.3%
3701347 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 60.0 3.83e-01 100.0% 22.6%
5041532 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 59.0 4.93e-01 100.0% 63.2%
3406670 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.66 58.0 4.62e-01 100.0% 55.3%
3575960 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 54.0 5.41e-01 100.0% 89.3%
5050298 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 56.0 5.39e-01 98.6% 96.5%
5042874 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 58.0 5.02e-01 100.0% 78.3%
3797107 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 59.0 5.39e-01 100.0% 77.9%
5016514 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 58.0 4.49e-01 100.0% 45.6%
4234563 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 57.0 5.61e-01 100.0% 94.9%
4928896 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 56.0 4.96e-01 100.0% 83.6%
4964458 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 57.0 5.07e-01 100.0% 81.9%
3071227 2.1.1.55 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CusF_Ec 0.64 55.0 5.05e-01 100.0% 72.0%
4237578 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.64 59.0 4.93e-01 100.0% 99.2%
3212560 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 51.0 5.25e-01 100.0% 95.7%
3497958 2.1.1.69 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RMI2 0.64 56.0 4.42e-01 100.0% 85.2%
3939264 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 55.0 5.03e-01 100.0% 74.7%
5008071 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 53.0 5.09e-01 100.0% 81.2%
3879039 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.62 54.0 4.60e-01 100.0% 68.0%
3575961 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.62 55.0 4.96e-01 100.0% 80.0%
3172086 2.1.1.15 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.62 55.0 4.72e-01 100.0% 67.8%
4265586 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.61 54.0 4.51e-01 97.3% 97.6%
4990915 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 49.0 4.97e-01 97.3% 92.9%
4953898 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.60 55.0 4.54e-01 100.0% 97.6%
4024809 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 52.0 4.91e-01 100.0% 94.4%
3785641 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 50.0 5.00e-01 94.5% 100.0%
3625309 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.59 50.0 4.38e-01 100.0% 65.0%
4965843 2.4.1.19 beta barrels › OB-fold › MOP-like › MOP-like › DUF7861 0.59 51.0 4.69e-01 94.5% 80.9%
4140237 2.1.1.88 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CSD2 0.59 47.0 4.51e-01 100.0% 74.4%
4180663 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.59 52.0 4.34e-01 97.3% 96.8%
3627759 109.4.1.192 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_8 0.58 48.0 3.15e-01 100.0% 20.0%
3839509 1.1.5.16 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › MreC 0.58 45.0 3.35e-01 84.9% 78.5%
4622758 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 50.0 4.62e-01 97.3% 94.7%
3620698 2.6.1.0 beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.58 50.0 4.68e-01 100.0% 76.8%
1405082 4.21.1.1 beta barrels › SH3 › ImpE-like › ImpE-like › ImpE 0.58 41.0 3.25e-01 78.1% 90.7%
3768088 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 50.0 4.30e-01 100.0% 71.7%
5037634 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 50.0 4.79e-01 100.0% 87.1%
3271738 2.1.1.137 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF6748 0.57 50.0 4.34e-01 100.0% 90.4%
1273132 2.2.1.1 beta barrels › OB-fold › Bacterial enterotoxins › Bacterial enterotoxins › Stap_Strp_toxin 0.56 47.0 4.54e-01 100.0% 82.6%
3387073 1.1.5.16 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › MreC 0.56 44.0 3.27e-01 86.3% 74.9%
4965423 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.56 47.0 4.07e-01 98.6% 99.2%
4630148 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.53 45.0 3.86e-01 100.0% 98.4%