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LC554890.1__BCG50072.1__X__00054

Bact-Vir

LC554890.1__BCG50072.1__X__00054

Identity

Accession:
LC554890 ↗
Kingdom:
phage

Quality

77.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Ralstonia_phage_RP13

TaxID: 2743402

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 19-74
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4bouA00 3.90.70.80 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.71 50.0 3.71e-01 75.0% 50.4%
3pfyA02 6.10.20.180 Special › Helix non-globular › Arc Repressor Mutant, subunit A › 0.66 47.0 4.71e-01 75.0% 91.2%
6dx5A00 3.90.70.80 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.64 50.0 3.54e-01 85.7% 65.7%
3hp7A01 3.10.290.10 Alpha Beta › Roll › Structural Genomics Hypothetical 15.5 Kd Protein In mrcA-pckA Intergenic Region; Chain A › RNA-binding S4 domain 0.56 41.0 4.05e-01 83.9% 89.2%
1r8eA02 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.55 41.0 3.92e-01 89.3% 80.8%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5004560 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.90 79.0 8.03e-01 100.0% 96.4%
4177991 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.88 75.0 7.61e-01 100.0% 94.5%
3955076 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.87 66.0 7.26e-01 85.7% 100.0%
3587382 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.87 76.0 7.68e-01 100.0% 96.4%
3190345 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.86 73.0 7.39e-01 100.0% 92.7%
3979943 101.15.1.3 ↗ alpha arrays › HTH › LysM domain › LysM domain › Phage_tail_X 0.84 70.0 7.36e-01 92.9% 100.0%
2809236 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.84 76.0 7.31e-01 100.0% 88.7%
4995817 101.15.1.4 ↗ alpha arrays › HTH › LysM domain › LysM domain › Phage_gp53 0.84 78.0 7.13e-01 100.0% 80.0%
3166029 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.83 69.0 6.94e-01 96.4% 92.7%
3654744 101.15.1.10 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM2_NFP 0.75 62.0 5.39e-01 100.0% 60.0%
3611431 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.73 65.0 6.35e-01 100.0% 93.3%
3595402 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.73 54.0 5.92e-01 82.1% 100.0%
3608297 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.71 53.0 5.77e-01 82.1% 100.0%
3716764 101.15.1.12 ↗ alpha arrays › HTH › LysM domain › LysM domain › PF30403 0.71 62.0 6.12e-01 100.0% 93.3%
4994965 2004.1.1.5 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ABC_tran 0.67 56.0 3.78e-01 100.0% 42.0%
3587989 221.1.2.5 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif › S4 0.65 54.0 5.21e-01 100.0% 96.9%
4100484 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.62 46.0 4.65e-01 85.7% 98.2%
4100614 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.60 44.0 4.51e-01 85.7% 98.2%
4329911 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.59 46.0 4.59e-01 92.9% 88.3%
3211387 327.19.1.2 ↗ a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain › Mlh1_C 0.56 41.0 3.53e-01 83.9% 91.4%