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LC554890.1__BCG50074.1__X__00056
Bact-VirLC554890.1__BCG50074.1__X__00056
Identity
- Accession:
- LC554890 ↗
- Kingdom:
- phage
Quality
47.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 475-542
D2
medium
residues 34-212
D3
medium
residues 563-661
Domain cluster:
rep: MZ475898.1__QYW05492.1__pEaSNUABM25_00136__00136__D550-637
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF21277.3 best | T6SS_VgrG3-like_C | 102.7 | 2.90e-29 | 100.0% | 49.7% |
D4
medium
residues 662-775
Domain cluster:
rep: OM112209.1__UKL29971.1__X__00001__D70-157
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF21277.3 best | T6SS_VgrG3-like_C | 72.4 | 5.90e-20 | 71.0% | 43.2% |
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1oj7A02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.69 | 49.0 | 4.04e-01 | 72.8% | 75.5% |
| 2v6yA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.65 | 31.0 | 3.69e-01 | 73.7% | 65.3% |
| 2pkeA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.64 | 43.0 | 4.99e-01 | 73.7% | 100.0% |
| 2gv9A05 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.64 | 34.0 | 4.49e-01 | 80.7% | 98.3% |
| 3aqbA00 | 1.20.120.1450 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.61 | 45.0 | 4.28e-01 | 78.9% | 65.2% |
| 1jgcA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.60 | 50.0 | 4.49e-01 | 91.2% | 85.6% |
| 1tjoB00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.60 | 45.0 | 3.91e-01 | 78.9% | 72.6% |
| 2chpA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.60 | 45.0 | 4.16e-01 | 79.8% | 85.1% |
| 2hroA02 | 1.10.274.10 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › PtsI, HPr-binding domain | 0.60 | 45.0 | 4.41e-01 | 80.7% | 85.9% |
| 2c41C01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.59 | 45.0 | 4.13e-01 | 79.8% | 84.6% |
| 4rocA01 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.59 | 41.0 | 4.30e-01 | 74.6% | 78.6% |
| 1dkxA02 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.59 | 30.0 | 3.49e-01 | 73.7% | 67.5% |
| 1m5iA00 | 1.10.287.450 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.58 | 33.0 | 3.52e-01 | 72.8% | 62.9% |
| 3u3iA02 | 1.20.58.1110 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 42.0 | 4.38e-01 | 76.3% | 99.1% |
| 5wp3B00 | 1.10.132.20 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor | 0.57 | 42.0 | 4.46e-01 | 75.4% | 87.3% |
| 2oerA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.57 | 44.0 | 3.70e-01 | 80.7% | 53.1% |
| 1t3dA01 | 1.10.3130.10 | Mainly Alpha › Orthogonal Bundle › serine acetyltransferase, domain 1 › serine acetyltransferase, domain 1 | 0.56 | 40.0 | 3.75e-01 | 72.8% | 95.0% |
| 3rfyA02 | 1.20.120.290 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Oxygen-evolving enhancer protein 3 (PsbQ), four-helix up-down bundle | 0.56 | 38.0 | 3.90e-01 | 92.1% | 72.9% |
| 1st6A04 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.55 | 40.0 | 3.98e-01 | 74.6% | 82.1% |
| 2wyhB04 | 1.20.1270.50 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Glycoside hydrolase family 38, central domain | 0.54 | 33.0 | 3.45e-01 | 89.5% | 66.3% |
| 2fzfA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.54 | 41.0 | 3.79e-01 | 79.8% | 80.7% |
| 2pfdA03 | 1.20.120.680 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Formiminotetrahydrofolate cyclodeaminase monomer, up-and-down helical bundle | 0.52 | 42.0 | 3.44e-01 | 85.1% | 98.5% |
| 6tepC02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.52 | 39.0 | 3.34e-01 | 78.1% | 85.1% |
| 5bqnA02 | 1.20.1120.10 | Mainly Alpha › Up-down Bundle › "Clostridium botulinum neurotoxin B, ""coiled-coil"" domain" › "Clostridium botulinum neurotoxin b, ""coiled-coil"" domain" | 0.52 | 43.0 | 3.03e-01 | 89.5% | 92.5% |
| 1orjD00 | 1.20.120.340 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS | 0.51 | 36.0 | 3.56e-01 | 74.6% | 99.2% |
| 2qgmA03 | 1.20.1440.30 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Biosynthetic Protein domain | 0.50 | 38.0 | 3.83e-01 | 79.8% | 84.5% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1284710 | 235.1.1.25 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › T6SS_VgrG3-like_C | 0.92 | 74.0 | 5.91e-01 | 93.0% | 47.0% |
| 3796461 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.67 | 37.0 | 4.45e-01 | 71.9% | 82.7% |
| 4939273 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.65 | 30.0 | 3.76e-01 | 73.7% | 70.0% |
| 3502655 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.62 | 45.0 | 3.81e-01 | 75.4% | 93.8% |
| 3480452 | 7515.1.1.0 ↗ | a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like | 0.62 | 47.0 | 3.29e-01 | 79.8% | 92.3% |
| 3619724 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.61 | 34.0 | 3.64e-01 | 78.9% | 61.0% |
| 4111212 | 622.4.1.30 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related › ETR1_N | 0.58 | 36.0 | 3.87e-01 | 82.5% | 71.0% |
| 3252760 | 310.2.1.0 ↗ | a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF | 0.58 | 41.0 | 4.16e-01 | 80.7% | 72.8% |
| 4100508 | 3843.1.1.4 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › PhaG_MnhG_YufB | 0.58 | 42.0 | 4.14e-01 | 88.6% | 70.8% |
| 3226778 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.57 | 40.0 | 3.47e-01 | 72.8% | 92.1% |
| 3724523 | 4121.1.1.7 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › PF26616 | 0.57 | 41.0 | 2.92e-01 | 75.4% | 76.1% |
| 3546181 | 4177.1.1.3 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › Arfaptin | 0.56 | 39.0 | 3.01e-01 | 70.2% | 74.0% |
| 3244615 | 188.1.1.1 ↗ | alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep | 0.56 | 45.0 | 3.40e-01 | 86.8% | 87.0% |
| 5072045 | 604.10.1.0 ↗ | alpha bundles › Spectrin repeat-like › Enzyme IIa from lactose specific PTS, IIa-lac › Enzyme IIa from lactose specific PTS, IIa-lac | 0.54 | 35.0 | 3.66e-01 | 70.2% | 70.5% |
| 3374493 | 5069.1.3.69 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › ETR1_N | 0.54 | 35.0 | 3.79e-01 | 86.0% | 77.9% |
| 4192664 | 622.4.1.0 ↗ | alpha bundles › YvfG-like › Mite allergen Der p 5-related › Mite allergen Der p 5-related | 0.53 | 40.0 | 2.92e-01 | 78.9% | 53.2% |
| 5034628 | 632.12.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Vng1086c-like › Vng1086c-like › UPF0058 | 0.53 | 38.0 | 4.11e-01 | 75.4% | 89.8% |
| 3633871 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 39.0 | 3.24e-01 | 77.2% | 52.6% |
| 3921635 | 603.2.1.0 ↗ | alpha bundles › STAT-like › STAT › STAT | 0.51 | 41.0 | 3.48e-01 | 86.0% | 80.5% |
| 4881515 | 3684.1.1.0 ↗ | alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like | 0.50 | 35.0 | 3.38e-01 | 70.2% | 64.3% |
| 3483263 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.50 | 36.0 | 3.61e-01 | 73.7% | 70.0% |