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LC554890.1__BCG50098.1__X__00080

Bact-Vir

LC554890.1__BCG50098.1__X__00080

Identity

Accession:
LC554890 ↗
Kingdom:
phage

Quality

70.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-81
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2wcrB00 3.10.129.140 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Helicobacter TNF-alpha-Inducing protein 0.73 63.0 4.85e-01 95.5% 84.2%
4z7xB00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.72 60.0 4.27e-01 95.5% 35.1%
2kp7A01 1.10.150.110 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like 0.72 60.0 5.85e-01 93.9% 91.9%
3llkA01 1.20.120.1960 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › QSOX sulfhydryl oxidase domain 0.72 57.0 5.04e-01 87.9% 68.4%
1r4wA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.71 59.0 4.20e-01 95.5% 32.2%
1oksA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.70 48.0 5.24e-01 89.4% 90.6%
4gftA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.69 47.0 4.83e-01 72.7% 74.6%
2k9lA00 1.10.10.1330 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › RNA polymerase sigma-54 factor, core-binding domain 0.68 59.0 5.69e-01 100.0% 89.5%
3bbzA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.67 47.0 5.26e-01 89.4% 100.0%
4heoA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.67 46.0 4.96e-01 89.4% 87.3%
1ks9A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.66 47.0 3.88e-01 75.8% 52.0%
1jswA01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.65 57.0 4.54e-01 100.0% 74.5%
3d5lB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 48.0 4.25e-01 80.3% 71.6%
3kzqA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.65 56.0 4.03e-01 100.0% 51.5%
3c8tA01 1.10.275.10 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Fumarase/aspartase (N-terminal domain) 0.64 56.0 4.92e-01 97.0% 78.4%
2w9zA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.64 52.0 4.22e-01 92.4% 57.1%
2ew2A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.63 44.0 3.57e-01 74.2% 50.7%
6tmfT00 1.10.60.20 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 0.63 45.0 4.54e-01 75.8% 84.4%
4gxzD00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.63 50.0 3.81e-01 98.5% 35.3%
3dfgA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 42.0 4.87e-01 72.7% 95.8%
7ar7E01 1.10.10.1590 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E 0.62 42.0 4.29e-01 71.2% 84.1%
1e3oC02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.61 41.0 4.50e-01 74.2% 95.8%
1akhB00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.61 43.0 4.13e-01 78.8% 64.1%
5vyoD00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.61 51.0 3.83e-01 100.0% 35.6%
2rn7A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 38.0 3.87e-01 71.2% 62.1%
2ivxB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.61 50.0 4.27e-01 95.5% 67.0%
2om6A02 1.10.150.400 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.60 47.0 4.51e-01 90.9% 97.5%
1dw9A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.60 46.0 4.20e-01 83.3% 85.1%
2kt0A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.59 40.0 4.43e-01 72.7% 100.0%
4c0zA02 1.10.150.480 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.59 47.0 4.29e-01 92.4% 76.0%
1f5qB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.59 49.0 4.00e-01 98.5% 62.3%
3pxpA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.59 48.0 4.32e-01 90.9% 84.9%
1x2nA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.58 40.0 4.19e-01 74.2% 85.0%
2ld5A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.58 37.0 3.76e-01 71.2% 65.7%
3jsbA01 1.20.1440.300 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › RNA-directed RNA polymerase L, helical domain 0.57 47.0 4.51e-01 95.5% 84.0%
1u89A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.57 49.0 3.89e-01 97.0% 71.9%
3hwrA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.57 40.0 3.28e-01 74.2% 52.7%
4aw9A00 3.40.50.1460 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 45.0 3.12e-01 92.4% 94.3%
2k89A00 3.10.20.870 Alpha Beta › Roll › Ubiquitin-like (UB roll) › PFU (PLAA family ubiquitin binding), C-terminal domain 0.56 46.0 4.39e-01 93.9% 77.5%
1xvpB00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.56 46.0 3.19e-01 93.9% 87.8%
2rldA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.55 47.0 3.99e-01 97.0% 74.6%
2n1rA00 1.10.150.90 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Immunodeficiency lentiviruses, gag gene matrix protein p17 0.55 44.0 3.67e-01 93.9% 70.1%
1nyaA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.53 43.0 3.35e-01 100.0% 95.5%
3c7mA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 45.0 3.28e-01 100.0% 69.2%
2es9A00 1.20.1290.30 Mainly Alpha › Up-down Bundle › AhpD-like › 0.52 44.0 3.80e-01 92.4% 68.0%
1t10A01 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.51 42.0 2.71e-01 97.0% 100.0%
ECOD (55)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3554752 108.1.1.0 alpha arrays › EF-hand › EF-hand-related › EF-hand 0.77 58.0 5.86e-01 80.3% 98.5%
3239915 181.2.1.0 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › CtsR dimerization domain › CtsR dimerization domain 0.76 56.0 5.71e-01 78.8% 84.6%
3227575 3009.1.1.0 alpha arrays › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like 0.72 62.0 4.39e-01 97.0% 31.9%
3621973 109.4.1.1317 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps53_N, VPS53_C 0.71 48.0 2.72e-01 72.7% 6.9%
3213449 509.1.1.0 alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain 0.71 55.0 5.47e-01 86.4% 87.1%
3710980 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.71 46.0 5.23e-01 71.2% 97.8%
4952929 102.8.1.0 alpha arrays › HhH/H2TH › UPF0348 protein MJ0951 C-terminal domain › UPF0348 protein MJ0951 C-terminal domain 0.70 60.0 5.01e-01 100.0% 54.2%
3463008 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.70 57.0 5.68e-01 92.4% 90.0%
4991064 2002.1.1.25 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HMGL-like 0.70 54.0 3.31e-01 81.8% 24.1%
5054296 2004.1.1.76 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.70 59.0 3.69e-01 98.5% 18.0%
5045366 102.1.1.0 alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.69 59.0 5.49e-01 97.0% 88.2%
135028 101.1.20.1 alpha arrays › HTH › HTH › Sigma54 core-binding domain › Sigma54_CBD 0.68 59.0 5.69e-01 100.0% 89.5%
2516139 2498.1.1.9 mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M1 0.67 57.0 3.99e-01 100.0% 51.3%
4927708 2485.1.1.41 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin_4 0.67 57.0 4.12e-01 97.0% 35.4%
4000268 3065.1.1.1 alpha bundles › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › ANIS5_cation-bd 0.66 60.0 4.69e-01 100.0% 90.4%
4972573 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.66 56.0 3.55e-01 98.5% 21.6%
4486212 7014.1.1.1 alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA 0.66 51.0 4.40e-01 84.8% 74.3%
3299470 1117.1.1.1 alpha arrays › Enhancer of polycomb-like protein 1 (Epl1) N-terminal domain › Enhancer of polycomb-like protein 1 (Epl1) N-terminal domain › Enhancer of polycomb-like protein 1 (Epl1) N-terminal domain › EPL1 0.65 48.0 3.62e-01 81.8% 48.9%
3323749 101.1.1.298 alpha arrays › HTH › HTH › Three-helical HTH › DUF7645 0.65 45.0 4.67e-01 75.8% 80.0%
5043127 2485.1.1.88 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › VSR_TRX 0.65 55.0 3.89e-01 98.5% 36.8%
4170883 103.7.1.2 alpha arrays › RuvA-C › Hypothetical protein MTH1615 › Hypothetical protein MTH1615 › DUF494 0.65 52.0 4.64e-01 92.4% 70.0%
4035675 103.7.1.2 alpha arrays › RuvA-C › Hypothetical protein MTH1615 › Hypothetical protein MTH1615 › DUF494 0.64 52.0 4.96e-01 93.9% 88.7%
4940134 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.64 54.0 3.94e-01 97.0% 34.9%
4296803 4957.1.1.4 a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit › DUF494 0.64 52.0 4.61e-01 93.9% 71.0%
3794915 3065.1.1.1 alpha bundles › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › ANIS5_cation-bd 0.63 55.0 4.38e-01 97.0% 52.6%
3926693 148.1.1.4 alpha arrays › Histone-like › Histone-related › Histone › CBFD_NFYB_HMF 0.63 46.0 3.73e-01 80.3% 62.2%
3919392 101.1.8.0 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes 0.62 47.0 3.90e-01 97.0% 45.0%
4970991 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 44.0 3.68e-01 78.8% 50.4%
3287665 101.1.4.18 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_31 0.61 52.0 5.03e-01 93.9% 100.0%
4528688 101.1.1.279 alpha arrays › HTH › HTH › Three-helical HTH › Sigma54_CBD 0.61 51.0 3.88e-01 95.5% 43.6%
4000254 3065.1.1.1 alpha bundles › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › Fatty acid- and retinoid-binding proteins › ANIS5_cation-bd 0.61 53.0 4.32e-01 98.5% 95.2%
4011174 5041.1.1.0 extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C 0.61 50.0 4.48e-01 100.0% 74.3%
3215991 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.61 43.0 4.39e-01 77.3% 80.0%
2491373 304.51.1.16 a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas6_csf5 0.60 52.0 4.23e-01 100.0% 80.3%
4290870 101.1.1.279 alpha arrays › HTH › HTH › Three-helical HTH › Sigma54_CBD 0.60 48.0 3.80e-01 93.9% 38.7%
3578718 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.60 51.0 4.60e-01 97.0% 74.7%
4944587 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.59 50.0 4.36e-01 98.5% 74.3%
3590898 101.1.20.1 alpha arrays › HTH › HTH › Sigma54 core-binding domain › Sigma54_CBD 0.58 47.0 3.75e-01 93.9% 41.3%
3972755 601.1.2.99 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › DAGK_prokar 0.58 45.0 3.77e-01 84.8% 70.3%
3984430 2007.2.4.3 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Phosphoinositide phosphatase › IpgD 0.58 51.0 3.04e-01 97.0% 95.6%
4111221 3413.1.1.1 alpha bundles › Inositol phosphate phosphatase sopB N-terminal domain › Inositol phosphate phosphatase sopB N-terminal domain › Inositol phosphate phosphatase sopB N-terminal domain › IpgD 0.58 48.0 4.18e-01 90.9% 78.0%
4010073 101.1.2.368 alpha arrays › HTH › HTH › winged helix domain › HTH_36 0.58 45.0 4.42e-01 87.9% 89.3%
4404513 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.58 37.0 3.64e-01 72.7% 57.3%
3993676 3919.1.1.0 alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 0.58 42.0 3.63e-01 77.3% 78.1%
4997192 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.58 48.0 3.41e-01 100.0% 38.3%
3340509 611.8.1.5 alpha bundles › N-cbl like › C-terminal domain of E3 ubiquitin-protein ligase ARIH1 › C-terminal domain of E3 ubiquitin-protein ligase ARIH1 › RPW8 0.58 41.0 3.61e-01 77.3% 93.3%
3489070 4030.1.1.0 alpha bundles › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz › alpha-helical domain in subunits of heterodimeric actin filament capping protein Capz 0.57 43.0 4.37e-01 90.9% 86.2%
5058464 186.1.1.4 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 0.57 46.0 4.39e-01 93.9% 88.7%
4948421 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.56 45.0 3.86e-01 92.4% 64.3%
3707222 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.56 39.0 4.18e-01 75.8% 92.7%
3168797 5001.1.1.190 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › NPR3 0.55 47.0 4.18e-01 97.0% 81.8%
3739461 1.1.7.4 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_1 0.54 44.0 2.78e-01 93.9% 23.7%
3958429 222.1.1.1 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydratas 0.52 37.0 3.09e-01 75.8% 96.8%
3279618 222.1.1.1 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydratas 0.51 36.0 3.04e-01 77.3% 96.8%
4930259 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.51 42.0 3.07e-01 100.0% 38.1%