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LC554890.1__BCG50163.1__X__00145
Bact-VirLC554890.1__BCG50163.1__X__00145
Identity
- Accession:
- LC554890 ↗
- Kingdom:
- phage
Quality
60.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 130-213
Domain cluster:
representative
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7c1iA01 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.65 | 44.0 | 4.17e-01 | 84.5% | 58.0% |
| 1zeeA01 | 1.20.58.600 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.64 | 49.0 | 4.40e-01 | 82.1% | 61.9% |
| 2a9uA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.64 | 53.0 | 4.69e-01 | 92.9% | 65.1% |
| 2vxxA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.64 | 50.0 | 3.95e-01 | 84.5% | 78.5% |
| 1orjD00 | 1.20.120.340 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS | 0.63 | 47.0 | 4.17e-01 | 81.0% | 60.8% |
| 4qmhA00 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.61 | 43.0 | 3.15e-01 | 78.6% | 26.3% |
| 1vcsA00 | 1.20.58.400 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › t-snare proteins | 0.61 | 46.0 | 4.37e-01 | 81.0% | 81.4% |
| 1e2aA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.61 | 45.0 | 4.30e-01 | 79.8% | 81.4% |
| 3cjdA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.60 | 48.0 | 3.81e-01 | 89.3% | 62.1% |
| 3iq1B00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.60 | 48.0 | 3.92e-01 | 88.1% | 84.9% |
| 2jqqA00 | 1.20.58.1240 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.60 | 48.0 | 3.96e-01 | 88.1% | 68.8% |
| 2oerA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.60 | 48.0 | 3.75e-01 | 86.9% | 65.4% |
| 3kyiA00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.59 | 45.0 | 3.97e-01 | 89.3% | 54.7% |
| 2d2sA01 | 1.20.58.1210 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Exo84p, N-terminal helical domain | 0.59 | 46.0 | 4.20e-01 | 86.9% | 73.3% |
| 1eyvB00 | 1.10.940.10 | Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like | 0.58 | 41.0 | 3.59e-01 | 75.0% | 97.7% |
| 4u7iA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.58 | 47.0 | 4.56e-01 | 89.3% | 92.5% |
| 3eabE00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.58 | 46.0 | 4.61e-01 | 88.1% | 95.3% |
| 1wtyA00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.57 | 45.0 | 4.07e-01 | 85.7% | 75.0% |
| 3l09A01 | 1.20.58.1460 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.57 | 43.0 | 4.10e-01 | 81.0% | 88.8% |
| 3l9fA02 | 6.10.140.1570 | Special › Helix non-globular › Helix Hairpins › | 0.57 | 42.0 | 4.27e-01 | 78.6% | 97.5% |
| 5cwhA01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.56 | 43.0 | 3.51e-01 | 82.1% | 44.2% |
| 1wfdA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.56 | 47.0 | 4.60e-01 | 98.8% | 86.0% |
| 3nowA01 | 1.25.10.10 | Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant | 0.56 | 44.0 | 2.94e-01 | 86.9% | 27.9% |
| 2oyoA02 | 1.20.1290.10 | Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like | 0.56 | 43.0 | 3.80e-01 | 83.3% | 88.0% |
| 1x9fD00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.55 | 39.0 | 3.37e-01 | 75.0% | 52.1% |
| 2r17C00 | 1.25.40.660 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Vacuolar protein sorting-associated protein 35, helical subcomplex Vps35-C | 0.55 | 46.0 | 3.18e-01 | 92.9% | 42.3% |
| 4hzuS00 | 1.10.1760.20 | Mainly Alpha › Orthogonal Bundle › Arp2/3 complex 21 kDa subunit ARPC3 › | 0.55 | 44.0 | 3.63e-01 | 90.5% | 83.5% |
| 3bt5A00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.53 | 42.0 | 3.57e-01 | 89.3% | 92.7% |
| 6jpaE00 | 1.20.140.150 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › | 0.53 | 44.0 | 3.54e-01 | 92.9% | 56.8% |
| 3ecsC01 | 1.20.120.1070 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Translation initiation factor eIF-2B, N-terminal domain | 0.52 | 40.0 | 3.84e-01 | 84.5% | 99.0% |
| 4abmD00 | 1.10.287.1060 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like | 0.52 | 35.0 | 3.70e-01 | 72.6% | 76.6% |
| 7dwqL01 | 1.20.1240.10 | Mainly Alpha › Up-down Bundle › Photosystem 1 Reaction Centre Subunit Xi; Chain: L; › Photosystem I PsaL, reaction centre subunit XI | 0.50 | 44.0 | 3.92e-01 | 100.0% | 94.4% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3617829 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.63 | 48.0 | 4.20e-01 | 81.0% | 86.4% |
| 5050223 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.62 | 45.0 | 3.28e-01 | 100.0% | 26.8% |
| 3802258 | 226.1.1.20 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › PF30468, PF30469 | 0.61 | 48.0 | 3.94e-01 | 88.1% | 55.9% |
| 3518069 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.61 | 42.0 | 3.51e-01 | 81.0% | 40.0% |
| 3689976 | 109.12.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › C-terminal domain of Ku80 › C-terminal domain of Ku80 › Ku_PK_bind | 0.61 | 46.0 | 3.72e-01 | 79.8% | 45.6% |
| 3938941 | 109.4.1.649 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF4807 | 0.61 | 43.0 | 3.75e-01 | 83.3% | 47.7% |
| 3737919 | 109.4.1.1526 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RasGEF_N_2, RICTOR_N, RICTOR_M, RICTOR_V | 0.60 | 48.0 | 2.70e-01 | 86.9% | 7.8% |
| 3188597 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.60 | 46.0 | 4.52e-01 | 82.1% | 87.8% |
| 3620170 | 7015.1.1.1 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › DHHC | 0.60 | 49.0 | 4.04e-01 | 89.3% | 64.7% |
| 4034363 | 604.12.1.0 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain | 0.60 | 46.0 | 4.28e-01 | 84.5% | 86.4% |
| 3938350 | 604.1.1.67 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin_5 | 0.59 | 45.0 | 4.21e-01 | 81.0% | 83.8% |
| 3592870 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.59 | 45.0 | 4.31e-01 | 82.1% | 71.0% |
| 5018387 | 604.18.1.0 ↗ | alpha bundles › Spectrin repeat-like › Triple-helical domain in regulatory ATPase variant A (RavA) › Triple-helical domain in regulatory ATPase variant A (RavA) | 0.59 | 44.0 | 4.14e-01 | 81.0% | 95.2% |
| 3246131 | 192.29.1.93 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › WSN | 0.58 | 48.0 | 4.10e-01 | 94.0% | 65.5% |
| 3933045 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.58 | 43.0 | 3.39e-01 | 81.0% | 54.5% |
| 3336125 | 603.1.1.99 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › PF27021 | 0.58 | 49.0 | 3.94e-01 | 95.2% | 91.2% |
| 3559443 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.58 | 43.0 | 3.58e-01 | 82.1% | 48.8% |
| 4934147 | 604.39.1.3 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › ECF-ribofla_trS | 0.56 | 44.0 | 3.59e-01 | 88.1% | 81.7% |
| 3260744 | 3745.1.1.1 ↗ | alpha bundles › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Sodium/Calcium exchanger › Na_Ca_ex | 0.56 | 49.0 | 3.26e-01 | 100.0% | 66.8% |
| 4927356 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.55 | 43.0 | 4.05e-01 | 84.5% | 68.6% |
| 3702282 | 604.1.1.0 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat | 0.55 | 44.0 | 3.79e-01 | 91.7% | 97.2% |
| 3741609 | 109.58.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › DNA repair protein Rev1 C-terminal domain › DNA repair protein Rev1 C-terminal domain › REV1_C | 0.54 | 40.0 | 3.89e-01 | 81.0% | 80.0% |
| 3980685 | 3890.1.1.1 ↗ | alpha bundles › Transmembrane Bax inhibitor motif (TMBIM) proteins › Transmembrane Bax inhibitor motif (TMBIM) proteins › Transmembrane Bax inhibitor motif (TMBIM) proteins › Bax1-I | 0.54 | 41.0 | 3.08e-01 | 82.1% | 55.8% |
| 3682662 | 7015.1.1.0 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain | 0.53 | 46.0 | 4.01e-01 | 98.8% | 75.4% |
| 3588754 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.52 | 39.0 | 3.05e-01 | 81.0% | 48.7% |
D2
medium
residues 20-127