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LC554890.1__BCG50193.1__X__00175
Bact-VirLC554890.1__BCG50193.1__X__00175
Identity
- Accession:
- LC554890 ↗
- Kingdom:
- phage
Quality
86.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-73
Domain cluster:
representative
CATH (28)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2p0lA00 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.65 | 57.0 | 3.89e-01 | 100.0% | 85.0% |
| 5t8uB01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.64 | 52.0 | 3.61e-01 | 91.5% | 60.3% |
| 2q7eA02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.63 | 50.0 | 3.65e-01 | 88.7% | 35.8% |
| 3bfmA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.62 | 50.0 | 3.84e-01 | 91.5% | 56.4% |
| 1nnvA01 | 3.10.450.140 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › dsDNA mimic, putative | 0.62 | 48.0 | 4.33e-01 | 84.5% | 96.0% |
| 1a1xA00 | 2.40.15.10 | Mainly Beta › Beta Barrel › Proto-oncogene - Oncogene Product P14tcl1 › TCL1/MTCP1 | 0.60 | 46.0 | 4.08e-01 | 84.5% | 95.3% |
| 1hxdA02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.59 | 49.0 | 3.66e-01 | 94.4% | 46.7% |
| 1vqzA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.59 | 49.0 | 3.49e-01 | 97.2% | 44.2% |
| 3fqmA01 | 2.20.25.210 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › Hepatitis C NS5A, domain 1B | 0.59 | 35.0 | 3.70e-01 | 94.4% | 67.2% |
| 3rkxA02 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.59 | 47.0 | 3.55e-01 | 93.0% | 46.5% |
| 2ddzE00 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.58 | 48.0 | 3.63e-01 | 95.8% | 45.8% |
| 1wqwA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.57 | 46.0 | 3.51e-01 | 91.5% | 46.5% |
| 3l1aA01 | 3.30.930.10 | Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 | 0.57 | 49.0 | 3.57e-01 | 100.0% | 44.4% |
| 1s7mA03 | 2.20.25.140 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.57 | 27.0 | 3.28e-01 | 77.5% | 96.4% |
| 4d47A00 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.57 | 46.0 | 2.89e-01 | 91.5% | 94.4% |
| 4mveA00 | 2.40.128.580 | Mainly Beta › Beta Barrel › Lipocalin › GXWXG domain | 0.56 | 44.0 | 3.63e-01 | 91.5% | 72.1% |
| 4ok4A02 | 2.70.98.70 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.56 | 49.0 | 3.13e-01 | 100.0% | 64.5% |
| 1hwmB02 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.55 | 43.0 | 3.70e-01 | 88.7% | 78.4% |
| 2dirA01 | 3.30.2300.10 | Alpha Beta › 2-Layer Sandwich › THUMP fold › THUMP superfamily | 0.54 | 42.0 | 4.00e-01 | 87.3% | 97.7% |
| 3frmA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.54 | 43.0 | 3.00e-01 | 90.1% | 42.1% |
| 6lciA01 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.54 | 41.0 | 3.44e-01 | 88.7% | 79.7% |
| 4hr6C01 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.53 | 41.0 | 3.44e-01 | 88.7% | 73.5% |
| 2azeB00 | 6.10.250.540 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.52 | 29.0 | 2.65e-01 | 94.4% | 36.6% |
| 2i9yA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.52 | 43.0 | 3.42e-01 | 94.4% | 78.3% |
| 8f5pE01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 42.0 | 2.68e-01 | 93.0% | 40.3% |
| 7lt2A01 | 3.30.460.90 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › | 0.51 | 40.0 | 2.85e-01 | 87.3% | 71.4% |
| 3l7wA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 36.0 | 3.26e-01 | 77.5% | 56.2% |
| 7bwfA00 | 3.30.2310.20 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › RelE-like | 0.50 | 42.0 | 4.00e-01 | 95.8% | 100.0% |
ECOD (58)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5011822 | 314.1.1.12 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat | 0.67 | 57.0 | 3.95e-01 | 95.8% | 45.3% |
| 5078132 | 314.1.1.12 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat | 0.66 | 56.0 | 3.85e-01 | 98.6% | 43.0% |
| 2041876 | 314.1.1.12 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat | 0.65 | 54.0 | 3.79e-01 | 93.0% | 42.1% |
| 4023881 | 314.1.1.12 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat | 0.64 | 52.0 | 3.56e-01 | 91.5% | 58.2% |
| 4998921 | 314.1.1.12 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat | 0.64 | 53.0 | 3.70e-01 | 94.4% | 45.6% |
| 4032275 | 314.1.1.12 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat | 0.64 | 52.0 | 3.66e-01 | 94.4% | 44.3% |
| 4988938 | 314.1.1.12 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat | 0.64 | 54.0 | 3.73e-01 | 97.2% | 42.3% |
| 4945497 | 314.1.1.12 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat | 0.63 | 52.0 | 3.64e-01 | 93.0% | 44.5% |
| 4937842 | 314.1.1.12 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat | 0.63 | 54.0 | 3.78e-01 | 97.2% | 44.9% |
| 4947841 | 314.1.1.12 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat | 0.63 | 54.0 | 3.80e-01 | 100.0% | 45.2% |
| 4945287 | 314.1.1.6 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB | 0.63 | 51.0 | 3.80e-01 | 93.0% | 48.0% |
| 5067836 | 314.1.1.12 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat | 0.63 | 53.0 | 3.69e-01 | 97.2% | 43.2% |
| 4998758 | 314.1.1.12 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat | 0.63 | 54.0 | 3.73e-01 | 98.6% | 43.9% |
| 4984097 | 314.1.1.12 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat | 0.62 | 51.0 | 3.62e-01 | 95.8% | 44.1% |
| 2171566 | 314.1.1.6 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB | 0.62 | 51.0 | 3.79e-01 | 97.2% | 37.1% |
| 5043217 | 314.1.1.12 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat | 0.62 | 51.0 | 3.52e-01 | 95.8% | 39.3% |
| 5047867 | 314.1.1.6 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB | 0.61 | 50.0 | 3.67e-01 | 93.0% | 49.0% |
| 5038404 | 314.1.1.6 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB | 0.61 | 50.0 | 3.82e-01 | 94.4% | 51.9% |
| 4999071 | 314.1.1.12 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat | 0.61 | 51.0 | 3.57e-01 | 95.8% | 45.2% |
| 4083827 | 314.1.1.6 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB | 0.61 | 50.0 | 3.64e-01 | 93.0% | 46.2% |
| 3831339 | 314.1.1.0 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases | 0.61 | 48.0 | 3.36e-01 | 90.1% | 37.7% |
| 3714168 | 314.1.1.12 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat | 0.61 | 51.0 | 3.39e-01 | 98.6% | 55.0% |
| 5069928 | 314.1.1.12 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat | 0.61 | 49.0 | 3.49e-01 | 93.0% | 44.9% |
| 4971174 | 314.1.1.0 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases | 0.61 | 51.0 | 3.58e-01 | 97.2% | 81.6% |
| 5073180 | 314.1.1.12 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat | 0.60 | 49.0 | 3.48e-01 | 94.4% | 44.8% |
| 4456886 | 314.1.1.12 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat | 0.60 | 49.0 | 3.63e-01 | 94.4% | 46.7% |
| 3386233 | 314.1.1.6 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB | 0.60 | 51.0 | 3.95e-01 | 100.0% | 48.0% |
| 2605088 | 314.1.1.6 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB | 0.60 | 51.0 | 3.89e-01 | 100.0% | 60.7% |
| 3971453 | 314.1.1.6 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB | 0.60 | 48.0 | 3.59e-01 | 93.0% | 45.9% |
| 4953222 | 314.1.1.6 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB | 0.60 | 48.0 | 3.57e-01 | 93.0% | 49.0% |
| 5038074 | 314.1.1.6 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB | 0.60 | 47.0 | 3.48e-01 | 91.5% | 41.6% |
| 5011773 | 314.1.1.12 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › LplA-B_cat | 0.60 | 50.0 | 3.53e-01 | 97.2% | 81.6% |
| 3593385 | 314.1.1.0 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases | 0.60 | 50.0 | 3.66e-01 | 100.0% | 50.2% |
| 3608890 | 314.1.1.6 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB | 0.59 | 50.0 | 3.59e-01 | 100.0% | 41.2% |
| 7026 | 314.1.1.6 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB | 0.59 | 48.0 | 3.68e-01 | 93.0% | 46.7% |
| 4957376 | 314.1.1.6 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB | 0.59 | 46.0 | 3.44e-01 | 90.1% | 47.1% |
| 1264082 | 314.1.1.6 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB | 0.59 | 48.0 | 3.53e-01 | 93.0% | 44.3% |
| 4288795 | 5.1.11.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed | 0.59 | 50.0 | 3.19e-01 | 95.8% | 36.6% |
| 5010242 | 314.1.1.6 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB | 0.59 | 48.0 | 3.66e-01 | 94.4% | 47.6% |
| 5072765 | 3740.1.1.4 ↗ | alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C | 0.59 | 50.0 | 3.50e-01 | 98.6% | 81.9% |
| 5058795 | 314.1.1.6 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB | 0.58 | 48.0 | 3.55e-01 | 95.8% | 48.1% |
| 2771876 | 1.1.16.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › Mammalian cell entry (MCE) domain › MlaD | 0.58 | 38.0 | 3.32e-01 | 93.0% | 42.5% |
| 4586611 | 314.1.1.6 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB | 0.58 | 49.0 | 3.67e-01 | 98.6% | 53.8% |
| 3951679 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.57 | 46.0 | 3.30e-01 | 94.4% | 39.6% |
| 7027 | 314.1.1.6 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB | 0.57 | 46.0 | 3.48e-01 | 91.5% | 46.3% |
| 4978681 | 314.1.1.6 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB | 0.57 | 48.0 | 3.57e-01 | 98.6% | 49.8% |
| 5008475 | 314.1.1.6 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › BPL_LplA_LipB | 0.56 | 45.0 | 3.42e-01 | 91.5% | 44.7% |
| 3602891 | 314.1.1.8 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › DUF366 | 0.56 | 48.0 | 3.58e-01 | 98.6% | 45.6% |
| 3795846 | 221.4.1.8 ↗ | a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX_2 | 0.56 | 33.0 | 2.75e-01 | 76.1% | 30.8% |
| 4965116 | 331.2.1.1 ↗ | a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV | 0.55 | 42.0 | 3.96e-01 | 94.4% | 69.3% |
| 5077779 | 2003.1.5.18 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › BpsA_C | 0.55 | 44.0 | 3.07e-01 | 91.5% | 83.1% |
| 3892942 | 391.1.2.0 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related | 0.53 | 36.0 | 4.07e-01 | 93.0% | 100.0% |
| 3470074 | 2003.1.5.28 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › mRNA_G-N7_MeTrfase | 0.53 | 43.0 | 2.78e-01 | 93.0% | 91.0% |
| 3257642 | 6.1.1.4 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Ricin_B_lectin | 0.52 | 39.0 | 2.99e-01 | 88.7% | 53.7% |
| 3269923 | 101.1.21.1 ↗ | alpha arrays › HTH › HTH › HTH in T7 RNA polymerase › RPOL_N | 0.51 | 38.0 | 2.71e-01 | 80.3% | 53.0% |
| 4011663 | 4964.1.1.2 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › RNA_pol | 0.51 | 36.0 | 2.59e-01 | 76.1% | 46.3% |
| 4996269 | 844.1.1.0 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain | 0.50 | 42.0 | 3.07e-01 | 97.2% | 60.0% |
| 4324615 | 844.1.1.2 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR | 0.50 | 41.0 | 3.27e-01 | 93.0% | 85.2% |