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LC554890.1__BCG50208.1__X__00190
Bact-VirLC554890.1__BCG50208.1__X__00190
Identity
- Accession:
- LC554890 ↗
- Kingdom:
- phage
Quality
97.7
mean pLDDT
Cluster
View cluster (10 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 3-92
Domain cluster:
rep: NC_028988.1__YP_009216561.1__AVU67_gp23__00023__D18-98
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4e6nA02 | 6.10.140.1010 | Special › Helix non-globular › Helix Hairpins › | 0.88 | 53.0 | 6.21e-01 | 70.0% | 83.3% |
| 1jkvA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.86 | 55.0 | 4.15e-01 | 70.0% | 29.9% |
| 4mt4A00 | 1.20.1600.10 | Mainly Alpha › Up-down Bundle › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) | 0.82 | 49.0 | 3.02e-01 | 70.0% | 11.7% |
| 2v0oB00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.80 | 54.0 | 3.68e-01 | 70.0% | 22.9% |
| 2zdiB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.80 | 54.0 | 5.10e-01 | 70.0% | 61.3% |
| 2q12A00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.79 | 53.0 | 3.76e-01 | 70.0% | 25.6% |
| 3vkgA12 | 1.10.287.2610 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.79 | 54.0 | 3.93e-01 | 70.0% | 35.3% |
| 3ofnY00 | 1.10.287.80 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain | 0.79 | 54.0 | 4.90e-01 | 70.0% | 73.9% |
| 4dylA01 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.78 | 53.0 | 3.74e-01 | 70.0% | 26.0% |
| 6cgaC02 | 1.20.58.860 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.78 | 48.0 | 5.14e-01 | 70.0% | 71.8% |
| 1zpyA00 | 6.10.140.1960 | Special › Helix non-globular › Helix Hairpins › | 0.78 | 62.0 | 6.26e-01 | 87.8% | 83.5% |
| 3lnnB03 | 1.10.287.470 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.77 | 52.0 | 6.04e-01 | 70.0% | 98.5% |
| 2b5uA02 | 1.10.287.620 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix Hairpins | 0.76 | 52.0 | 4.16e-01 | 70.0% | 50.3% |
| 3wmeA01 | 1.20.1560.10 | Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain | 0.75 | 52.0 | 3.46e-01 | 71.1% | 36.4% |
| 2lw1A00 | 1.10.287.380 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Valyl-tRNA synthetase, C-terminal domain | 0.75 | 51.0 | 5.29e-01 | 70.0% | 75.3% |
| 4q4hA01 | 1.20.1560.10 | Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain | 0.74 | 52.0 | 3.47e-01 | 72.2% | 20.4% |
| 1h7cA00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.72 | 49.0 | 4.65e-01 | 70.0% | 60.2% |
| 3rrkA02 | 1.20.1460.20 | Mainly Alpha › Up-down Bundle › subunit c (vma5p) of the yeast v-atpase, domain 2 › | 0.72 | 49.0 | 4.05e-01 | 70.0% | 100.0% |
| 4fzsA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.72 | 49.0 | 3.68e-01 | 70.0% | 55.0% |
| 4wpcA00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.71 | 48.0 | 3.36e-01 | 70.0% | 29.7% |
| 6grjB01 | 1.20.1170.10 | Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › | 0.69 | 53.0 | 3.60e-01 | 81.1% | 71.5% |
| 1wpaA01 | 6.10.140.340 | Special › Helix non-globular › Helix Hairpins › | 0.69 | 47.0 | 4.58e-01 | 71.1% | 63.6% |
| 3na7A00 | 1.10.287.1490 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.69 | 47.0 | 3.41e-01 | 70.0% | 27.8% |
| 3fppA03 | 6.10.140.1990 | Special › Helix non-globular › Helix Hairpins › | 0.68 | 46.0 | 4.68e-01 | 70.0% | 70.5% |
| 2lqgA00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.67 | 46.0 | 3.97e-01 | 70.0% | 45.7% |
| 1ydxA02 | 1.10.287.1120 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Bipartite methylase S protein | 0.67 | 47.0 | 4.74e-01 | 72.2% | 92.2% |
| 4id0A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.65 | 47.0 | 4.37e-01 | 75.6% | 83.9% |
| 1tjlA00 | 1.20.120.910 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain | 0.65 | 44.0 | 3.77e-01 | 70.0% | 44.8% |
| 4etrB00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.64 | 48.0 | 4.40e-01 | 81.1% | 84.4% |
| 3swhA01 | 1.10.357.50 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › | 0.62 | 55.0 | 4.55e-01 | 100.0% | 97.0% |
| 4mk3A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.62 | 49.0 | 4.50e-01 | 84.4% | 94.8% |
| 1a22A00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.60 | 51.0 | 4.09e-01 | 93.3% | 83.3% |
| 2dnxA00 | 1.20.58.70 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.59 | 47.0 | 4.15e-01 | 85.6% | 73.8% |
| 3dbyL00 | 1.20.1260.120 | Mainly Alpha › Up-down Bundle › Ferritin › Protein of unknown function DUF2935 | 0.59 | 50.0 | 3.66e-01 | 95.6% | 88.8% |
| 4jgiA01 | 1.10.1240.10 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Methionine synthase domain | 0.58 | 42.0 | 4.42e-01 | 77.8% | 85.0% |
| 3kyiA00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.57 | 44.0 | 4.00e-01 | 85.6% | 90.6% |
| 6v9zA02 | 1.20.1560.10 | Mainly Alpha › Up-down Bundle › ABC transporter transmembrane region fold › ABC transporter type 1, transmembrane domain | 0.56 | 52.0 | 3.51e-01 | 100.0% | 74.5% |
| 2mabA00 | 1.10.10.1350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain | 0.51 | 40.0 | 3.82e-01 | 85.6% | 74.3% |
ECOD (50)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3415351 | 192.5.1.0 ↗ | alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat | 0.85 | 57.0 | 5.22e-01 | 70.0% | 53.9% |
| 3763261 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.82 | 55.0 | 4.01e-01 | 70.0% | 28.2% |
| 3699463 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.82 | 56.0 | 4.09e-01 | 70.0% | 39.1% |
| 4136919 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.82 | 56.0 | 4.26e-01 | 70.0% | 45.4% |
| 3678791 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.81 | 55.0 | 4.04e-01 | 70.0% | 67.6% |
| 5027495 | 192.12.1.0 ↗ | alpha bundles › Long alpha-hairpin › Transcriptional repressor TraM › Transcriptional repressor TraM | 0.80 | 53.0 | 5.51e-01 | 75.6% | 71.8% |
| 4950970 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.80 | 55.0 | 3.48e-01 | 70.0% | 20.3% |
| 3564754 | 604.1.1.96 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Bap31 | 0.80 | 55.0 | 4.67e-01 | 70.0% | 46.7% |
| 3976632 | 3291.1.1.4 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › PspA_IM30 | 0.80 | 55.0 | 4.49e-01 | 70.0% | 42.0% |
| 4246573 | 3755.1.1.8 ↗ | alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related › FliJ | 0.80 | 54.0 | 4.47e-01 | 70.0% | 78.7% |
| 4286404 | 3755.1.1.14 ↗ | alpha bundles › YscO-like › Putative type III secretion protein YscO-related › Putative type III secretion protein YscO-related › T3SSipB | 0.80 | 54.0 | 4.19e-01 | 70.0% | 35.0% |
| 3279013 | 1075.4.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane | 0.79 | 56.0 | 3.66e-01 | 72.2% | 21.2% |
| 3932987 | 4177.1.1.10 ↗ | alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like › GMIP-like_FCH | 0.79 | 54.0 | 3.73e-01 | 70.0% | 28.7% |
| 3644022 | 6055.1.1.3 ↗ | extended segments › Preprotein translocase subunit YajC › Preprotein translocase subunit YajC › Preprotein translocase subunit YajC › Utp11 | 0.79 | 54.0 | 5.07e-01 | 70.0% | 65.7% |
| 4270843 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.78 | 53.0 | 4.32e-01 | 70.0% | 49.7% |
| 4387171 | 603.5.1.18 ↗ | alpha bundles › STAT-like › FlgN-like › FlgN-like › Med30 | 0.77 | 53.0 | 4.29e-01 | 70.0% | 40.6% |
| 3609435 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.77 | 52.0 | 5.24e-01 | 70.0% | 68.9% |
| 4501248 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.76 | 55.0 | 4.38e-01 | 75.6% | 81.2% |
| 5032886 | 2004.1.1.293 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 | 0.76 | 51.0 | 2.96e-01 | 70.0% | 9.1% |
| 4943750 | 1075.4.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane | 0.75 | 51.0 | 3.41e-01 | 71.1% | 19.7% |
| 3402974 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.75 | 51.0 | 4.20e-01 | 70.0% | 40.6% |
| 3421052 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.75 | 51.0 | 3.69e-01 | 70.0% | 26.8% |
| 3205388 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.75 | 51.0 | 3.67e-01 | 70.0% | 29.4% |
| None | — | 0.75 | 51.0 | 3.74e-01 | 70.0% | 29.1% | |
| 4234516 | 1075.4.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane | 0.74 | 52.0 | 3.38e-01 | 72.2% | 18.8% |
| 3332512 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.73 | 59.0 | 4.59e-01 | 86.7% | 52.6% |
| 5002054 | 4323.1.1.0 ↗ | alpha bundles › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C › helical bundle domain in vacuolar ATP synthase subunit C | 0.73 | 51.0 | 4.22e-01 | 72.2% | 62.0% |
| 4530254 | 2004.1.1.348 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SbcC_Walker_B | 0.73 | 52.0 | 3.16e-01 | 74.4% | 24.1% |
| 3510163 | 604.5.1.0 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) | 0.72 | 59.0 | 5.44e-01 | 85.6% | 71.8% |
| 3219921 | 5001.1.1.84 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srz | 0.70 | 54.0 | 3.73e-01 | 82.2% | 64.7% |
| 3702706 | 192.15.1.0 ↗ | alpha bundles › Long alpha-hairpin › Endosomal sorting complex assembly domains › Endosomal sorting complex assembly domains | 0.69 | 47.0 | 4.94e-01 | 70.0% | 78.8% |
| 4951992 | 5041.1.1.55 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › DUF1622 | 0.69 | 50.0 | 4.84e-01 | 75.6% | 77.0% |
| 3390311 | 604.7.1.0 ↗ | alpha bundles › Spectrin repeat-like › Tubulin chaperone cofactor A › Tubulin chaperone cofactor A | 0.69 | 59.0 | 5.46e-01 | 90.0% | 98.2% |
| 4022306 | 3939.1.1.0 ↗ | alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain | 0.69 | 47.0 | 3.93e-01 | 70.0% | 42.0% |
| 5077973 | 1075.4.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane | 0.69 | 62.0 | 4.29e-01 | 100.0% | 76.3% |
| 2886939 | 1075.4.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane | 0.68 | 63.0 | 4.23e-01 | 100.0% | 75.9% |
| 5021813 | 5058.1.1.101 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › DUF1622 | 0.68 | 50.0 | 4.77e-01 | 77.8% | 76.2% |
| 3963952 | 3684.1.1.26 ↗ | alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › SirB | 0.65 | 59.0 | 5.25e-01 | 96.7% | 83.1% |
| 3788511 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.65 | 43.0 | 2.69e-01 | 71.1% | 13.2% |
| 3976372 | 1075.4.1.9 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_tran+ABC_membrane | 0.65 | 58.0 | 3.52e-01 | 100.0% | 41.8% |
| 3718408 | 3922.1.1.0 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 | 0.64 | 56.0 | 5.22e-01 | 93.3% | 82.7% |
| 4648944 | 101.1.2.88 ↗ | alpha arrays › HTH › HTH › winged helix domain › Dimerisation | 0.64 | 54.0 | 4.04e-01 | 90.0% | 66.5% |
| 4543045 | 1075.4.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane | 0.62 | 55.0 | 3.83e-01 | 100.0% | 75.0% |
| 3430318 | 1075.4.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane | 0.61 | 53.0 | 3.67e-01 | 98.9% | 44.8% |
| 3288931 | 1075.4.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane | 0.61 | 54.0 | 3.68e-01 | 100.0% | 73.1% |
| 2462953 | 1075.4.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane | 0.58 | 53.0 | 3.68e-01 | 100.0% | 77.3% |
| 3272531 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.58 | 53.0 | 3.61e-01 | 100.0% | 54.0% |
| 5007608 | 633.22.1.0 ↗ | alpha bundles › Bromodomain-like › Vitamin K epoxide reductase (VKOR) › Vitamin K epoxide reductase (VKOR) | 0.57 | 44.0 | 4.06e-01 | 84.4% | 63.5% |
| 3178828 | 1075.4.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane | 0.57 | 51.0 | 3.55e-01 | 100.0% | 75.4% |
| 4310125 | 1075.4.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › Type I ABC exporter transmembrane domain fold › ABC_membrane | 0.57 | 49.0 | 3.46e-01 | 100.0% | 75.3% |