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LC554890.1__BCG50229.1__X__00211

Bact-Vir

LC554890.1__BCG50229.1__X__00211

Identity

Accession:
LC554890 ↗
Kingdom:
phage

Quality

89.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 21-68
PDB
Domain cluster: representative
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3njaA02 2.10.70.100 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.72 55.0 5.60e-01 81.2% 91.3%
6euaA01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.72 55.0 3.97e-01 85.4% 30.2%
6m9yA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.72 52.0 4.94e-01 85.4% 66.7%
6gp1A00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.70 50.0 4.63e-01 85.4% 58.5%
3llcA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.69 52.0 3.32e-01 85.4% 28.4%
2z6oA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.69 52.0 3.61e-01 83.3% 57.8%
7pkwA01 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.67 45.0 3.52e-01 70.8% 33.0%
4pzaB00 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.66 52.0 3.42e-01 89.6% 98.6%
2eenA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.66 54.0 3.73e-01 95.8% 28.2%
2ebmA00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.66 50.0 3.73e-01 85.4% 33.6%
1wnhA01 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.65 49.0 3.99e-01 85.4% 43.0%
7wa9A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.65 47.0 3.45e-01 85.4% 27.0%
3c19A02 3.10.20.300 Alpha Beta › Roll › Ubiquitin-like (UB roll) › mk0293 like domain 0.65 48.0 4.18e-01 83.3% 52.6%
2g2sA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.64 47.0 4.39e-01 85.4% 60.9%
3tekA00 3.30.470.50 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › 0.64 48.0 3.53e-01 85.4% 82.7%
4d6wA03 2.30.29.130 Mainly Beta › Roll › PH-domain like › 0.63 46.0 3.76e-01 79.2% 42.1%
2jheA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.63 48.0 3.73e-01 97.9% 37.0%
1u2eA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.62 52.0 3.26e-01 100.0% 66.4%
3zqsA01 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.61 42.0 3.58e-01 83.3% 40.9%
3bxpB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.61 44.0 2.88e-01 83.3% 27.1%
2icuA00 3.90.1680.10 Alpha Beta › Alpha-Beta Complex › hypothetical protein yedk fold › SOS response associated peptidase-like 0.61 50.0 3.39e-01 100.0% 46.7%
6zj8D01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 45.0 3.53e-01 87.5% 37.7%
1kyfA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.58 41.0 3.26e-01 83.3% 32.7%
2yz0A00 3.10.110.10 Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme 0.58 43.0 3.23e-01 83.3% 29.7%
2d9wA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 43.0 3.36e-01 83.3% 38.2%
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.58 41.0 3.53e-01 87.5% 45.2%
5bw0F00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.57 43.0 3.59e-01 100.0% 45.1%
3ci0I00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.57 40.0 3.51e-01 87.5% 45.8%
5l2pA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.57 43.0 2.67e-01 85.4% 21.9%
2ab5B01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.56 47.0 3.51e-01 97.9% 61.7%
2jbwA02 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 41.0 2.69e-01 87.5% 26.6%
3k7uC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 42.0 3.38e-01 85.4% 93.9%
2id0A02 2.40.50.640 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 43.0 3.84e-01 87.5% 95.9%
4f0jA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.55 46.0 2.88e-01 100.0% 59.3%
3ml4C01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 47.0 3.65e-01 100.0% 43.5%
4c89C00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 46.0 2.77e-01 97.9% 72.9%
3ub1A01 3.10.450.540 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 41.0 3.15e-01 91.7% 43.4%
1su0B00 3.90.1010.10 Alpha Beta › Alpha-Beta Complex › Sufe protein. Chain: A › 0.53 36.0 2.76e-01 85.4% 25.7%
3wa7A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 43.0 2.55e-01 100.0% 12.2%
4fm4B02 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.52 36.0 2.93e-01 75.0% 48.5%
6yfiB01 3.30.380.10 Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein 0.52 43.0 3.27e-01 100.0% 43.7%
1zhhB01 3.30.450.220 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › LuxQ periplasmic domain, N-terminal subdomain 0.52 44.0 3.14e-01 100.0% 33.1%
4wy5A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 41.0 2.61e-01 97.9% 76.9%
3qitB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 43.0 2.76e-01 100.0% 95.4%
1tzzB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.51 39.0 3.23e-01 100.0% 79.0%
1p0zA00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 36.0 2.76e-01 85.4% 29.0%
1xi7A00 4.10.40.20 Few Secondary Structures › Irregular › Omega-AgatoxinV › 0.51 34.0 3.50e-01 83.3% 72.3%
2qmqA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.51 38.0 2.48e-01 89.6% 26.3%
3o2iA00 3.30.70.2710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 39.0 3.33e-01 93.8% 76.3%
6f1uK02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.50 39.0 3.03e-01 100.0% 64.1%
3en9A03 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 37.0 3.38e-01 85.4% 98.6%
7prrB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.50 38.0 2.72e-01 87.5% 24.9%
1n08A00 2.40.30.30 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like 0.50 41.0 2.97e-01 95.8% 50.0%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3270992 216.1.1.3 a+b two layers › UBC-like › UBC-like › UBC-like › UEV 0.73 57.0 4.06e-01 85.4% 30.0%
4797813 271.1.1.1 beta barrels › GFP-like › GFP-like › GFP-like › GFP 0.72 52.0 4.94e-01 85.4% 66.7%
3253855 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.70 52.0 4.34e-01 85.4% 45.9%
2490256 271.1.1.1 beta barrels › GFP-like › GFP-like › GFP-like › GFP 0.70 50.0 4.60e-01 85.4% 57.6%
4964555 3604.1.1.1 a+b two layers › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Uncharacterized protein MK0293 C-terminal domain › Ni_insertion 0.69 53.0 4.78e-01 83.3% 64.6%
4770305 271.1.1.1 beta barrels › GFP-like › GFP-like › GFP-like › GFP 0.69 49.0 4.58e-01 85.4% 59.4%
4023238 220.1.1.195 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_fung_RdRP 0.68 54.0 3.74e-01 89.6% 38.2%
3577516 2484.1.1.1 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.67 50.0 3.20e-01 83.3% 17.6%
4028705 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.66 48.0 3.69e-01 85.4% 32.5%
3659556 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.66 51.0 5.22e-01 87.5% 93.3%
4982145 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.66 49.0 3.72e-01 85.4% 32.5%
165197 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.66 50.0 3.73e-01 85.4% 33.6%
3573806 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.65 50.0 3.74e-01 85.4% 33.3%
None 0.64 46.0 3.65e-01 85.4% 34.2%
3425790 243.3.1.19 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF3615 0.64 48.0 3.96e-01 85.4% 44.2%
3626566 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.64 49.0 3.76e-01 85.4% 37.4%
4771028 271.1.1.1 beta barrels › GFP-like › GFP-like › GFP-like › GFP 0.64 47.0 4.36e-01 85.4% 61.9%
3218749 295.1.1.4 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › COMM_domain 0.64 46.0 4.35e-01 79.2% 63.3%
3419181 5.1.3.144 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.63 51.0 3.20e-01 93.8% 25.8%
4379531 223.1.1.41 a+b three layers › Profilin-like › sensor domains › sensor domains › HisK_sensor 0.62 49.0 3.31e-01 89.6% 23.6%
3652488 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.62 53.0 2.90e-01 100.0% 10.2%
4353676 223.1.1.41 a+b three layers › Profilin-like › sensor domains › sensor domains › HisK_sensor 0.62 49.0 3.60e-01 89.6% 34.1%
4958220 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.62 54.0 3.94e-01 97.9% 36.9%
4980708 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.62 48.0 3.49e-01 87.5% 32.1%
5044346 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.61 46.0 3.64e-01 87.5% 37.3%
4951932 223.1.1.3 a+b three layers › Profilin-like › sensor domains › sensor domains › GAF 0.61 48.0 2.97e-01 89.6% 14.7%
3345737 5.1.3.65 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.61 50.0 3.16e-01 100.0% 30.3%
3786990 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.61 47.0 3.47e-01 85.4% 33.1%
3495452 2006.1.1.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like 0.61 52.0 3.20e-01 95.8% 16.6%
3265841 216.1.1.20 a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.61 43.0 3.45e-01 85.4% 37.0%
3242799 2.1.1.249 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_DEPS-1_2nd 0.60 49.0 4.04e-01 87.5% 81.2%
3253359 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.60 50.0 3.09e-01 100.0% 25.0%
5027780 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.60 50.0 4.76e-01 97.9% 86.7%
3606476 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.59 44.0 4.27e-01 100.0% 72.7%
3742201 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.59 45.0 3.34e-01 85.4% 31.9%
4952182 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.59 47.0 3.63e-01 89.6% 39.1%
5019574 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.59 51.0 3.88e-01 97.9% 41.7%
5029914 252.2.1.0 a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.59 49.0 4.73e-01 97.9% 92.7%
3478110 5.1.4.271 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, PF30361 0.58 49.0 2.97e-01 100.0% 18.9%
3708505 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 47.0 3.52e-01 97.9% 66.7%
3506512 2.1.1.168 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF1980_C 0.57 48.0 4.04e-01 100.0% 88.9%
4963337 223.1.1.14 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 0.57 43.0 3.28e-01 87.5% 33.8%
355233 274.1.1.4 a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSI 0.57 40.0 3.48e-01 87.5% 45.0%
1891870 3794.1.2.0 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › a+b domain in pyruvate carboxylase 0.57 41.0 3.59e-01 85.4% 47.6%
3720313 2484.1.1.57 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ydc2-catalyt 0.57 46.0 3.00e-01 100.0% 75.6%
3342566 5.1.3.118 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.56 45.0 2.88e-01 100.0% 27.0%
5018717 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 39.0 3.75e-01 81.2% 65.5%
3601659 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 43.0 3.24e-01 97.9% 34.7%
3510355 216.1.1.4 a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.55 41.0 3.20e-01 85.4% 36.7%
5079481 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.55 39.0 2.73e-01 85.4% 21.7%
4964662 223.1.1.2 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS 0.54 41.0 3.17e-01 87.5% 37.5%
3998298 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.54 41.0 2.85e-01 93.8% 21.9%
3289119 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 38.0 2.28e-01 95.8% 9.6%
4990980 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.53 44.0 3.56e-01 93.8% 74.7%
4003398 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 41.0 3.40e-01 97.9% 62.9%
3833240 283.2.1.0 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like 0.52 37.0 3.14e-01 83.3% 40.9%
3645842 4.1.1.162 beta barrels › SH3 › SH3 › SH3 › DUF502 0.52 44.0 3.79e-01 100.0% 93.8%
3517350 5.1.5.4 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N 0.52 41.0 2.61e-01 100.0% 31.1%
3499841 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.52 44.0 3.62e-01 100.0% 51.1%
3789933 11.10.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like 0.52 39.0 3.11e-01 85.4% 40.0%
3719211 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.51 40.0 3.97e-01 95.8% 85.5%
3996695 3256.1.1.0 a+b two layers › DUF2233 N-terminal domain › DUF2233 N-terminal domain › DUF2233 N-terminal domain 0.51 38.0 3.69e-01 85.4% 72.7%
4013893 4.1.1.225 beta barrels › SH3 › SH3 › SH3 › DUF7025 0.51 43.0 3.30e-01 100.0% 86.7%
3819309 330.1.1.5 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › DND1_DSRM 0.51 42.0 3.61e-01 100.0% 61.2%
3820157 5.1.4.550 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.51 40.0 2.86e-01 100.0% 41.6%
3608102 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.51 42.0 3.84e-01 100.0% 72.9%
3404964 221.13.1.0 a+b two layers › beta-Grasp › Mitochondrial calcium uniporter N-terminal domain › Mitochondrial calcium uniporter N-terminal domain 0.50 35.0 2.79e-01 75.0% 33.9%
3405170 375.1.1.257 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Cuticle_3 0.50 35.0 3.70e-01 85.4% 90.0%