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LC554890.1__BCG50240.1__X__00222

Bact-Vir

LC554890.1__BCG50240.1__X__00222

Identity

Accession:
LC554890 ↗
Kingdom:
phage

Quality

85.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Ralstonia_phage_RP13

TaxID: 2743402

Cluster

View cluster (19 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-73
PDB
Domain cluster: rep: OK094664.1__UEP18789.1__vBSbQDWS_55__00055__D7-79
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.81 62.0 6.79e-01 100.0% 98.1%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 55.0 5.67e-01 100.0% 83.9%
1vq8T00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.71 54.0 4.39e-01 100.0% 44.5%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.68 52.0 5.39e-01 100.0% 88.7%
1txqA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.64 60.0 5.72e-01 100.0% 89.2%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.63 50.0 3.90e-01 100.0% 39.1%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 50.0 4.89e-01 100.0% 80.8%
1ixdA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.62 56.0 4.79e-01 100.0% 65.4%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 49.0 4.71e-01 100.0% 76.0%
1whjA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.60 54.0 4.65e-01 100.0% 63.7%
3agjF01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.60 53.0 4.28e-01 100.0% 57.5%
3pieC05 2.170.260.40 Mainly Beta › Beta Complex › paz domain › 0.59 53.0 3.92e-01 100.0% 67.1%
2vgmA01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.58 51.0 4.21e-01 100.0% 54.9%
2rsoA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.58 38.0 3.45e-01 75.8% 48.9%
1vx4404 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 40.0 3.25e-01 74.2% 65.0%
4b43A03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 40.0 3.37e-01 74.2% 79.1%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.57 41.0 4.28e-01 100.0% 86.4%
4rlzA02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.57 45.0 3.80e-01 100.0% 51.8%
2hcjB02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 40.0 3.60e-01 74.2% 92.6%
1m4zA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.57 51.0 3.60e-01 100.0% 49.0%
4v19O00 2.40.150.20 Mainly Beta › Beta Barrel › Ribosomal Protein L14 › Ribosomal protein L14/L23 0.56 50.0 4.12e-01 97.0% 60.9%
4damC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 44.0 3.89e-01 86.4% 91.0%
3he1A00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.55 45.0 3.60e-01 93.9% 88.4%
2kx2A00 3.30.780.30 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › 0.54 37.0 3.36e-01 72.7% 84.4%
3g1jA00 2.30.30.350 Mainly Beta › Roll › SH3 type barrels. › mobile metagenome of vibrio cholerae. Integron cassette protein vch_cass4. 0.54 47.0 4.30e-01 100.0% 78.9%
1i1jB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.53 44.0 3.87e-01 100.0% 61.5%
4fwwA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 43.0 2.64e-01 97.0% 22.9%
2lexA00 2.20.25.80 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › WRKY domain 0.51 36.0 3.66e-01 92.4% 77.8%
3gzrB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 41.0 3.37e-01 95.5% 80.1%
2chcC00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 43.0 3.28e-01 97.0% 67.9%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4941620 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.83 59.0 6.23e-01 100.0% 81.7%
4306285 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 61.0 5.97e-01 100.0% 72.9%
4644007 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.82 59.0 6.20e-01 100.0% 83.1%
4354770 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.82 58.0 5.73e-01 100.0% 70.0%
5058103 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 58.0 5.78e-01 100.0% 72.1%
4629735 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.82 59.0 6.00e-01 100.0% 76.9%
4300449 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.81 58.0 5.92e-01 100.0% 76.9%
4971532 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 58.0 5.72e-01 100.0% 71.4%
5075469 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.80 58.0 5.84e-01 100.0% 76.9%
5029655 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 57.0 5.97e-01 100.0% 81.7%
5069062 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.80 57.0 5.99e-01 100.0% 83.1%
4467360 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.80 57.0 5.93e-01 100.0% 81.7%
4943273 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 57.0 5.78e-01 100.0% 76.9%
4621153 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 55.0 5.74e-01 100.0% 81.7%
3799904 4.1.1.315 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_12, XRN1_D1 0.73 64.0 3.88e-01 100.0% 15.7%
3875355 4.1.1.103 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_12 0.73 66.0 4.64e-01 100.0% 34.2%
3739064 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 57.0 5.82e-01 100.0% 86.2%
3934278 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 59.0 4.81e-01 100.0% 49.6%
4874232 4.1.1.29 ↗ beta barrels › SH3 › SH3 › SH3 › PSI_PsaE 0.72 63.0 6.21e-01 100.0% 89.9%
3585492 4.1.1.103 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_12 0.72 64.0 5.30e-01 100.0% 57.3%
3218475 4.1.1.390 ↗ beta barrels › SH3 › SH3 › SH3 › PF29855 0.70 57.0 4.63e-01 100.0% 48.3%
3591144 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.68 54.0 4.13e-01 98.5% 38.0%
3259841 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 59.0 5.85e-01 100.0% 90.0%
3609256 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 56.0 5.07e-01 100.0% 68.2%
3676628 4.1.1.162 ↗ beta barrels › SH3 › SH3 › SH3 › DUF502 0.67 55.0 4.46e-01 100.0% 48.3%
3185321 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.67 57.0 5.51e-01 100.0% 81.3%
3645842 4.1.1.162 ↗ beta barrels › SH3 › SH3 › SH3 › DUF502 0.67 55.0 5.13e-01 100.0% 72.5%
3630782 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.67 57.0 4.35e-01 100.0% 42.1%
4022025 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.67 57.0 4.34e-01 100.0% 42.1%
3867207 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.66 54.0 4.75e-01 100.0% 62.1%
3272197 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 58.0 4.93e-01 100.0% 61.0%
3624306 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.65 59.0 4.76e-01 100.0% 62.4%
3598499 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 60.0 4.60e-01 100.0% 53.6%
3935042 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.64 58.0 4.86e-01 98.5% 60.9%
1175108 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.64 60.0 4.91e-01 100.0% 58.9%
4029263 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.64 59.0 4.76e-01 100.0% 55.8%
3470175 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.64 59.0 5.52e-01 100.0% 82.5%
4171942 4.1.1.178 ↗ beta barrels › SH3 › SH3 › SH3 › ribosomal_L24 0.63 58.0 4.90e-01 100.0% 64.4%
577 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.63 57.0 4.19e-01 100.0% 40.6%
3213653 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.62 56.0 5.29e-01 100.0% 92.5%
572 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.62 56.0 4.79e-01 100.0% 65.4%
4250193 4.1.1.78 ↗ beta barrels › SH3 › SH3 › SH3 › TTD 0.62 51.0 4.66e-01 100.0% 67.8%
578 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.62 56.0 4.41e-01 100.0% 50.8%
3555838 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.61 57.0 5.10e-01 100.0% 73.3%
3699364 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.61 56.0 5.41e-01 100.0% 89.3%
3784770 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.61 56.0 5.36e-01 100.0% 88.0%
5053224 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 45.0 4.71e-01 98.5% 88.3%
4422325 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 53.0 4.84e-01 100.0% 78.7%
5000523 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.60 52.0 4.35e-01 100.0% 59.2%
2552660 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.60 52.0 4.26e-01 100.0% 56.7%
4954224 4.1.1.182 ↗ beta barrels › SH3 › SH3 › SH3 › DUF2097 0.59 49.0 4.40e-01 100.0% 64.2%
3255397 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 52.0 3.98e-01 100.0% 51.0%
4536848 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.59 51.0 4.15e-01 100.0% 60.0%
3411042 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.58 47.0 4.88e-01 100.0% 95.0%
3631313 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.58 51.0 3.70e-01 100.0% 37.4%
3708173 1.1.7.7 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.57 42.0 3.32e-01 80.3% 71.0%
3926950 4.1.1.214 ↗ beta barrels › SH3 › SH3 › SH3 › GCN5L1 0.56 49.0 4.01e-01 95.5% 56.7%
3707878 5.1.2.33 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › BNR_3 0.56 47.0 3.17e-01 97.0% 30.4%
4234560 1.1.12.1 ↗ beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth 0.56 49.0 3.92e-01 100.0% 74.1%
3734536 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.55 44.0 3.87e-01 90.9% 92.4%
4874616 389.1.2.1 ↗ few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain › Sushi 0.55 42.0 4.16e-01 95.5% 77.5%
4123449 4.8.1.35 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF1292 0.55 47.0 4.30e-01 97.0% 72.9%
4387111 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.54 47.0 4.45e-01 100.0% 85.0%
5051220 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 41.0 3.76e-01 100.0% 63.3%
4615629 4.1.1.449 ↗ beta barrels › SH3 › SH3 › SH3 › DUF1292 0.51 44.0 4.11e-01 97.0% 76.5%
3926869 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.51 39.0 2.51e-01 83.3% 39.1%