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LC554890.1__BCG50266.1__X__00248
Bact-VirLC554890.1__BCG50266.1__X__00248
Identity
- Accession:
- LC554890 ↗
- Kingdom:
- phage
Quality
53.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-78
Domain cluster:
representative
CATH (27)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 8cwoF01 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.66 | 51.0 | 4.87e-01 | 83.1% | 98.9% |
| 8d8lF01 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.66 | 53.0 | 4.62e-01 | 89.6% | 91.9% |
| 2qikA01 | 3.10.490.10 | Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like | 0.63 | 54.0 | 4.90e-01 | 100.0% | 87.3% |
| 6wubf01 | 3.30.70.60 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B | 0.60 | 46.0 | 4.42e-01 | 85.7% | 98.9% |
| 2qrrA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.60 | 47.0 | 4.40e-01 | 85.7% | 79.4% |
| 1uw4A00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.59 | 46.0 | 4.42e-01 | 88.3% | 96.7% |
| 1ykwA01 | 3.30.70.150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RuBisCO large subunit, N-terminal domain | 0.58 | 45.0 | 3.84e-01 | 84.4% | 77.1% |
| 1a7gE00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.58 | 45.0 | 4.45e-01 | 87.0% | 93.9% |
| 3dcaA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 45.0 | 3.87e-01 | 85.7% | 79.2% |
| 3bf4A01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 45.0 | 4.21e-01 | 87.0% | 100.0% |
| 2bopA00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.57 | 44.0 | 4.31e-01 | 87.0% | 94.1% |
| 1vx4407 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 42.0 | 4.40e-01 | 84.4% | 100.0% |
| 2lqjA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.56 | 44.0 | 4.22e-01 | 92.2% | 91.5% |
| 3qjlA02 | 3.30.70.1900 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 43.0 | 3.78e-01 | 85.7% | 93.3% |
| 2od6C00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 42.0 | 3.92e-01 | 87.0% | 90.7% |
| 2qswA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.55 | 47.0 | 4.48e-01 | 94.8% | 86.7% |
| 2f7vA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 42.0 | 3.83e-01 | 85.7% | 95.4% |
| 2efpA02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.55 | 42.0 | 3.96e-01 | 85.7% | 75.5% |
| 4c97A02 | 3.30.70.1900 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 42.0 | 3.52e-01 | 85.7% | 91.8% |
| 2rilA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 41.0 | 3.95e-01 | 89.6% | 93.7% |
| 3bn7A00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 40.0 | 3.74e-01 | 87.0% | 95.1% |
| 3au0A01 | 2.60.40.1280 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.52 | 37.0 | 3.04e-01 | 75.3% | 76.5% |
| 2cpiA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.52 | 39.0 | 3.90e-01 | 84.4% | 100.0% |
| 4ff5A00 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.52 | 36.0 | 2.68e-01 | 74.0% | 93.8% |
| 4c98A02 | 3.30.70.1900 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 39.0 | 3.35e-01 | 84.4% | 90.5% |
| 4ei0A01 | 2.60.40.3550 | Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4466 | 0.51 | 35.0 | 3.01e-01 | 75.3% | 81.6% |
| 1sqeA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 37.0 | 3.56e-01 | 87.0% | 93.1% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4445285 | 810.1.1.9 ↗ | a+b two layers › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › BtrG-like (Pfam 03674) › PF28338 | 0.64 | 56.0 | 3.97e-01 | 100.0% | 84.4% |
| 5011411 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.64 | 49.0 | 4.81e-01 | 84.4% | 92.9% |
| 4969104 | 304.12.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 | 0.63 | 49.0 | 4.82e-01 | 85.7% | 97.6% |
| 4927015 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.62 | 47.0 | 4.67e-01 | 83.1% | 93.8% |
| 3795154 | 304.25.1.0 ↗ | a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain | 0.61 | 47.0 | 4.31e-01 | 84.4% | 96.2% |
| 3528314 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.60 | 50.0 | 4.55e-01 | 90.9% | 83.8% |
| 4944096 | 304.51.1.1 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cas6_C | 0.60 | 47.0 | 4.03e-01 | 84.4% | 96.0% |
| 5077058 | 304.51.1.1 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cas6_C | 0.60 | 47.0 | 4.01e-01 | 84.4% | 94.4% |
| 5009977 | 4261.1.1.1 ↗ | a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA_C | 0.60 | 43.0 | 4.56e-01 | 76.6% | 98.6% |
| 3581950 | 304.12.1.0 ↗ | a+b two layers › Alpha-beta plaits › Ribosomal protein S6 › Ribosomal protein S6 | 0.59 | 46.0 | 4.29e-01 | 84.4% | 91.8% |
| 3699926 | 304.51.1.0 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related | 0.59 | 45.0 | 3.90e-01 | 85.7% | 90.0% |
| 5077618 | 304.51.1.1 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cas6_C | 0.59 | 49.0 | 4.18e-01 | 90.9% | 96.0% |
| 4976260 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.59 | 44.0 | 4.35e-01 | 84.4% | 89.4% |
| 135474 | 304.4.1.10 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › DUF1330 | 0.58 | 45.0 | 3.86e-01 | 88.3% | 79.3% |
| 3728308 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.58 | 45.0 | 4.16e-01 | 85.7% | 83.0% |
| 4990222 | 304.4.1.20 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg2 | 0.57 | 44.0 | 4.17e-01 | 85.7% | 69.5% |
| 3664706 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.56 | 43.0 | 4.18e-01 | 84.4% | 89.4% |
| 3375055 | 304.114.1.2 ↗ | a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain › POL3_N | 0.56 | 42.0 | 3.89e-01 | 81.8% | 99.0% |
| 4961623 | 304.8.1.115 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › T2SSM_b | 0.56 | 48.0 | 4.58e-01 | 97.4% | 91.1% |
| 4944949 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.54 | 38.0 | 3.19e-01 | 76.6% | 57.9% |
| 4161177 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.52 | 43.0 | 2.72e-01 | 96.1% | 37.5% |
| 4011744 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.52 | 41.0 | 3.95e-01 | 89.6% | 97.8% |
| 4944095 | 304.51.1.1 ↗ | a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas_Cas6_C | 0.52 | 41.0 | 3.60e-01 | 85.7% | 97.4% |
| 3626314 | 862.1.1.11 ↗ | a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › AEP_C962R | 0.51 | 41.0 | 2.97e-01 | 90.9% | 84.4% |
| 3885459 | 11.1.1.661 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_CD22 | 0.51 | 38.0 | 3.27e-01 | 79.2% | 79.2% |
| 3806911 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.51 | 41.0 | 4.01e-01 | 93.5% | 95.6% |
| 3714094 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.51 | 38.0 | 3.50e-01 | 84.4% | 90.9% |
| 3486006 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.50 | 40.0 | 3.35e-01 | 89.6% | 64.1% |
| 3498644 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.50 | 40.0 | 3.81e-01 | 92.2% | 90.5% |
| 5021830 | 11.1.1.130 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Inhibitor_I42 | 0.50 | 36.0 | 3.38e-01 | 79.2% | 77.1% |
D2
high
residues 103-187