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LC557520.1__BCG66269.1__X__00008

Bact-Vir

LC557520.1__BCG66269.1__X__00008

Identity

Accession:
LC557520 ↗
Kingdom:
phage

Quality

59.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 25-91
PDB
Domain cluster: representative
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.86 59.0 6.75e-01 71.6% 100.0%
1dj7B00 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.83 58.0 5.66e-01 73.1% 98.6%
2gtjA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.81 56.0 5.44e-01 71.6% 79.7%
3e1sA04 2.30.30.940 Mainly Beta › Roll › SH3 type barrels. › 0.81 60.0 5.99e-01 77.6% 100.0%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.81 58.0 5.49e-01 74.6% 79.5%
2vknA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.81 57.0 5.75e-01 73.1% 90.9%
2v1rA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.80 59.0 5.97e-01 77.6% 97.0%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.80 57.0 5.74e-01 74.6% 100.0%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.76 53.0 5.22e-01 73.1% 88.9%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.76 52.0 5.96e-01 77.6% 100.0%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 53.0 5.32e-01 76.1% 72.5%
3urgA02 2.30.30.530 Mainly Beta › Roll › SH3 type barrels. › Calcium binding protein CcbP, beta-barrel domain 0.73 53.0 5.45e-01 76.1% 98.4%
2digA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 53.0 5.36e-01 77.6% 80.9%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 62.0 6.14e-01 92.5% 98.6%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 54.0 5.58e-01 79.1% 91.9%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 52.0 5.25e-01 76.1% 78.8%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 48.0 5.24e-01 73.1% 91.1%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.69 48.0 4.90e-01 74.6% 86.6%
2ldmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 51.0 5.57e-01 79.1% 100.0%
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 49.0 4.80e-01 76.1% 87.5%
3pfsB00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 57.0 4.57e-01 92.5% 91.5%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 51.0 5.33e-01 82.1% 95.2%
4ry2A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.64 50.0 3.97e-01 86.6% 53.9%
1vw4G00 3.40.5.10 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › Ribosomal protein L9, N-terminal domain 0.61 41.0 4.44e-01 76.1% 85.5%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.61 42.0 4.26e-01 71.6% 75.8%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.61 43.0 4.53e-01 76.1% 91.7%
6biqC01 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.59 46.0 3.81e-01 85.1% 69.4%
1ex4B02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.58 43.0 4.52e-01 82.1% 96.6%
3k8uA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.58 45.0 3.67e-01 86.6% 86.3%
3h8lA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 40.0 3.11e-01 73.1% 100.0%
4fdyA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.56 44.0 3.58e-01 86.6% 58.2%
4owkE00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.56 43.0 3.50e-01 85.1% 99.3%
2k2jA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 39.0 3.37e-01 77.6% 77.8%
2c0nA00 3.90.550.40 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › 0.55 37.0 2.65e-01 70.1% 94.2%
4eqsA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 42.0 3.32e-01 83.6% 84.6%
5nmxB02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 38.0 3.48e-01 74.6% 100.0%
2vobB02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.54 45.0 3.28e-01 100.0% 73.8%
1dynA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 36.0 3.11e-01 70.1% 92.0%
4fgoA00 3.10.620.30 Alpha Beta › Roll › C8orf32 fold › 0.53 45.0 3.43e-01 100.0% 49.2%
3npfA03 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.51 39.0 3.05e-01 86.6% 54.0%
3a2yA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.50 38.0 2.91e-01 86.6% 64.3%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4347063 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.90 64.0 4.96e-01 74.6% 100.0%
1746358 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.87 61.0 5.10e-01 73.1% 100.0%
3221094 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.84 59.0 4.84e-01 73.1% 70.4%
2726885 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.84 59.0 4.85e-01 73.1% 100.0%
3841524 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.83 59.0 4.88e-01 73.1% 54.5%
3924338 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.82 64.0 6.34e-01 82.1% 90.0%
3589606 4.1.1.109 beta barrels › SH3 › SH3 › SH3 › SH3_13 0.82 57.0 5.62e-01 71.6% 90.0%
3385654 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.82 60.0 4.79e-01 76.1% 100.0%
3964560 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 55.0 5.48e-01 71.6% 84.3%
3240406 4.1.1.347 beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.80 58.0 4.76e-01 76.1% 46.1%
3475510 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 64.0 5.73e-01 85.1% 96.7%
3023952 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 59.0 4.84e-01 77.6% 100.0%
4101587 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.79 60.0 5.05e-01 79.1% 100.0%
3501574 4.1.1.118 beta barrels › SH3 › SH3 › SH3 › SH3_15 0.79 58.0 5.63e-01 77.6% 94.7%
3609597 4.1.1.236 beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.79 53.0 5.58e-01 74.6% 76.7%
3955235 4.1.1.183 beta barrels › SH3 › SH3 › SH3 › DUF4926 0.78 63.0 5.96e-01 86.6% 83.7%
3299797 4.1.1.306 beta barrels › SH3 › SH3 › SH3 › SH3_VIII-1_N 0.78 54.0 5.67e-01 73.1% 80.0%
3415045 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.77 59.0 5.82e-01 80.6% 92.9%
3958145 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 52.0 5.29e-01 70.1% 93.8%
3598284 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 54.0 5.91e-01 77.6% 89.1%
3166323 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 55.0 5.47e-01 77.6% 84.3%
3511277 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 51.0 4.84e-01 71.6% 75.0%
140210 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 53.0 5.32e-01 76.1% 72.5%
3817476 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.73 50.0 5.74e-01 73.1% 96.0%
3213114 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.72 62.0 5.57e-01 92.5% 91.1%
4844109 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.72 53.0 5.22e-01 82.1% 73.2%
3741020 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 51.0 5.10e-01 74.6% 77.1%
3706786 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 57.0 5.50e-01 83.6% 78.7%
4117297 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 52.0 5.17e-01 76.1% 97.1%
3796759 4.1.1.287 beta barrels › SH3 › SH3 › SH3 › DUF5641 0.72 51.0 4.50e-01 74.6% 53.7%
3853598 4.25.1.2 beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD 0.71 57.0 5.39e-01 85.1% 78.8%
1889033 2004.1.1.203 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD_C_2 0.71 63.0 4.26e-01 100.0% 62.3%
3037102 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 53.0 5.55e-01 79.1% 85.5%
3649741 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.70 52.0 5.03e-01 88.1% 70.7%
3999480 4.1.1.311 beta barrels › SH3 › SH3 › SH3 › BRWD_AD 0.69 55.0 5.00e-01 83.6% 75.3%
3505725 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 50.0 5.44e-01 76.1% 100.0%
3457106 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.69 54.0 5.56e-01 85.1% 100.0%
3855974 4.1.1.253 beta barrels › SH3 › SH3 › SH3 › DUF4537 0.69 55.0 5.35e-01 86.6% 89.3%
3218844 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 54.0 4.88e-01 88.1% 63.3%
3326980 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.68 55.0 5.74e-01 89.6% 96.7%
3764432 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 53.0 5.43e-01 83.6% 86.2%
4132516 4.1.1.253 beta barrels › SH3 › SH3 › SH3 › DUF4537 0.67 54.0 5.14e-01 88.1% 88.7%
3428486 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.66 54.0 5.13e-01 89.6% 96.2%
5054668 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 40.0 4.63e-01 74.6% 91.1%
3995160 4.1.1.233 beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.65 46.0 5.26e-01 77.6% 100.0%
3382832 4.1.1.302 beta barrels › SH3 › SH3 › SH3 › tSH3-B_UBE2O 0.64 53.0 3.81e-01 88.1% 47.2%
3973655 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.62 48.0 3.44e-01 85.1% 63.4%
1420591 4076.1.1.1 a+b two layers › L9 N-domain-like › L9 N-domain-like › L9 N-domain-like › Ribosomal_L9_N 0.61 41.0 4.44e-01 76.1% 85.5%
5022234 4.7.1.0 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.61 43.0 4.15e-01 76.1% 71.8%
4060774 219.1.1.63 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › TGL 0.60 48.0 3.24e-01 86.6% 32.0%
1691933 219.1.1.63 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › TGL 0.60 48.0 3.25e-01 86.6% 45.9%
2410168 219.1.1.8 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.58 45.0 3.67e-01 86.6% 64.4%
5056599 219.1.1.51 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C39_2 0.58 47.0 3.66e-01 91.0% 62.0%
5012603 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.57 42.0 3.22e-01 77.6% 69.3%
5024590 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.57 43.0 2.77e-01 82.1% 47.5%
154189 219.1.1.8 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › NLPC_P60 0.56 44.0 3.67e-01 86.6% 66.9%
3486885 9.8.1.1 beta barrels › Lipocalins/Streptavidin › Dipeptidyl peptidase I (cathepsin C), exclusion domain › Dipeptidyl peptidase I (cathepsin C), exclusion domain › CathepsinC_exc 0.56 40.0 3.40e-01 74.6% 91.8%
3875439 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.56 43.0 3.50e-01 85.1% 65.9%
3510483 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.56 39.0 3.09e-01 74.6% 98.7%
3302832 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.55 42.0 3.15e-01 82.1% 88.2%
3960690 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.54 40.0 3.18e-01 80.6% 84.1%
3194816 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.53 42.0 2.83e-01 89.6% 97.6%
3375066 2003.1.2.128 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox, FMO-like, Pyr_redox_3 0.53 39.0 2.96e-01 80.6% 96.1%
3724527 2003.1.2.5 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like 0.53 39.0 2.88e-01 82.1% 99.0%
3206217 2003.1.2.5 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FMO-like 0.52 39.0 3.10e-01 82.1% 99.3%
3659256 2003.1.2.30 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_3 0.52 39.0 3.54e-01 82.1% 96.8%
3995629 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.52 37.0 2.91e-01 80.6% 79.4%
3192819 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.51 41.0 2.85e-01 91.0% 97.6%
3241718 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 35.0 2.39e-01 73.1% 40.4%
3995582 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.51 36.0 3.24e-01 77.6% 82.0%