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LC557520.1__BCG66273.1__X__00012

Bact-Vir

LC557520.1__BCG66273.1__X__00012

Identity

Accession:
LC557520 ↗
Kingdom:
phage

Quality

93.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 33-86
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1adjB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.79 55.0 4.55e-01 74.1% 95.7%
1atiB02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.73 52.0 4.15e-01 77.8% 99.1%
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.70 54.0 5.13e-01 85.2% 69.7%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.69 52.0 5.20e-01 87.0% 78.9%
1kz7C02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.68 60.0 4.43e-01 98.1% 39.4%
2wyhB06 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.68 54.0 3.40e-01 87.0% 91.5%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.67 56.0 4.35e-01 94.4% 43.0%
5vmzA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.67 46.0 5.05e-01 81.5% 100.0%
1wiiA01 2.20.25.190 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.66 46.0 4.45e-01 74.1% 75.8%
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 58.0 4.64e-01 100.0% 51.9%
4mp8A01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.65 47.0 3.41e-01 79.6% 47.2%
1j8bA00 3.30.1310.10 Alpha Beta › 2-Layer Sandwich › Ybab; Chain: A; › Nucleoid-associated protein YbaB-like domain 0.64 51.0 4.18e-01 98.1% 50.0%
1zxuA00 2.40.160.200 Mainly Beta › Beta Barrel › Porin › LURP1-related 0.64 43.0 3.08e-01 70.4% 93.8%
2jxwA00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.63 38.0 3.44e-01 75.9% 40.0%
1neiA00 3.30.160.220 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YoaG 0.63 43.0 4.27e-01 74.1% 91.7%
2gw6A01 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.62 38.0 3.00e-01 87.0% 28.4%
4hdoA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 45.0 3.83e-01 92.6% 47.8%
2hc5A01 3.30.160.170 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › FlaG-like 0.61 47.0 3.99e-01 88.9% 60.2%
2dk7A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.60 37.0 3.43e-01 77.8% 43.8%
2w8mA00 3.40.1350.50 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › D212 PD-(D/E)XK nuclease, catalytic motif 0.60 51.0 3.67e-01 96.3% 62.4%
7o06C01 3.30.1470.10 Alpha Beta › 2-Layer Sandwich › Photosystem 1 Reaction Centre Subunit Ii; Chain: D; › Photosystem I PsaD, reaction center subunit II 0.59 42.0 3.60e-01 77.8% 100.0%
3qowA01 1.10.260.60 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › 0.59 53.0 4.03e-01 100.0% 68.0%
1bp1A01 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.59 51.0 3.55e-01 98.1% 92.8%
4hasA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.58 50.0 4.08e-01 98.1% 84.6%
2ysiA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.58 34.0 3.88e-01 75.9% 93.9%
1x9mA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.57 52.0 3.39e-01 100.0% 38.1%
2vseA04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.57 44.0 3.30e-01 87.0% 55.2%
5ucoA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.57 44.0 3.22e-01 87.0% 70.6%
1ywyA00 3.40.1170.40 Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › Protein of unknown function DUF3203 0.57 38.0 3.52e-01 72.2% 66.2%
4gp3A03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.56 41.0 3.24e-01 79.6% 57.4%
2zwrB00 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.56 42.0 2.88e-01 83.3% 66.7%
1bxgA01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.56 45.0 3.57e-01 98.1% 92.6%
1yw5A01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.55 37.0 3.55e-01 83.3% 60.3%
1ybyA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.54 37.0 3.55e-01 72.2% 73.4%
2c47A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 36.0 3.37e-01 70.4% 80.8%
3kk7A03 3.30.160.840 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 37.0 3.54e-01 70.4% 62.9%
7uqyB01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.54 40.0 2.77e-01 83.3% 49.5%
1z8gA01 3.10.250.10 Alpha Beta › Roll › Mac-2 Binding Protein › SRCR-like domain 0.54 36.0 2.98e-01 70.4% 81.7%
2rsmA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 45.0 3.64e-01 98.1% 56.5%
1f8wA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 42.0 3.03e-01 88.9% 45.5%
2w5qA01 3.30.1120.170 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.53 46.0 3.82e-01 98.1% 55.9%
1zymA01 3.50.30.10 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Phosphohistidine domain 0.52 41.0 3.24e-01 88.9% 95.0%
6rwcA02 2.20.25.590 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.52 30.0 3.35e-01 70.4% 74.4%
3lifA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 36.0 3.16e-01 77.8% 60.0%
3icsA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 38.0 2.71e-01 87.0% 94.9%
3lxqA01 3.30.1120.80 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.50 41.0 3.40e-01 92.6% 91.9%
ECOD (63)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5079258 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.83 61.0 6.59e-01 83.3% 95.6%
4945596 4325.1.1.0 mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.73 53.0 5.63e-01 77.8% 95.6%
3224950 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.73 61.0 4.88e-01 98.1% 47.6%
4386701 310.2.1.35 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › PF28954 0.70 56.0 4.03e-01 85.2% 89.0%
4027092 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.70 50.0 3.95e-01 75.9% 96.4%
4937526 7502.1.1.1 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.70 57.0 4.40e-01 94.4% 43.1%
3646226 375.1.1.31 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.69 47.0 4.14e-01 72.2% 76.2%
3627795 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.68 54.0 4.69e-01 96.3% 56.5%
3416458 386.1.1.259 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF29169 0.68 50.0 5.37e-01 81.5% 95.6%
4257463 4292.1.1.1 a+b two layers › FlaG-like › FlaG-related › FlaG-related › FlaG 0.66 56.0 5.01e-01 94.4% 82.7%
5001324 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 57.0 4.64e-01 100.0% 51.4%
3356481 386.1.1.117 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF7028 0.65 47.0 4.15e-01 88.9% 50.6%
4618205 604.1.1.150 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF28954 0.65 55.0 4.13e-01 98.1% 40.8%
None 0.65 46.0 2.86e-01 96.3% 13.4%
3241191 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.64 52.0 4.18e-01 98.1% 45.2%
3705154 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.63 39.0 4.32e-01 70.4% 80.0%
3661622 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.63 39.0 4.26e-01 77.8% 85.0%
3592215 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.62 39.0 3.99e-01 77.8% 64.2%
3265458 2004.1.1.81 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › GBP 0.62 55.0 3.37e-01 100.0% 39.4%
3228049 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.61 37.0 4.11e-01 70.4% 85.7%
3379478 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.61 38.0 4.01e-01 79.6% 73.3%
3900931 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.61 38.0 3.99e-01 75.9% 71.1%
3947081 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.61 53.0 5.03e-01 100.0% 93.8%
3239607 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.60 36.0 3.93e-01 70.4% 85.7%
3507112 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.60 37.0 3.84e-01 75.9% 64.0%
4028035 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.60 36.0 4.11e-01 75.9% 88.6%
3176989 601.19.1.40 alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › PF28954 0.59 52.0 3.74e-01 100.0% 56.2%
3605636 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.59 36.0 3.60e-01 70.4% 54.5%
3844867 64.1.1.7 beta meanders › WW domain-like › WW domain › WW domain › WW_USP8 0.59 34.0 4.04e-01 70.4% 88.6%
3759995 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.59 43.0 2.73e-01 77.8% 23.8%
3622767 214.1.1.0 a+b two layers › SH2 › SH2 › SH2 0.59 43.0 3.57e-01 77.8% 78.9%
3190898 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.59 36.0 3.92e-01 72.2% 77.5%
3709555 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.59 47.0 4.67e-01 96.3% 85.5%
5078315 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.58 41.0 2.36e-01 75.9% 10.5%
3410345 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.58 33.0 4.12e-01 74.1% 100.0%
3888040 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.58 42.0 3.95e-01 88.9% 61.4%
3624687 64.1.1.9 beta meanders › WW domain-like › WW domain › WW domain › WW_TCERG1 0.57 35.0 3.64e-01 72.2% 62.0%
3268247 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.57 51.0 3.08e-01 98.1% 63.6%
5015133 4100.1.1.9 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › DUF7387 0.57 48.0 4.70e-01 98.1% 91.7%
3840033 2003.1.15.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Glycosyltransferase Maf N-terminal domain 0.56 41.0 2.89e-01 79.6% 77.3%
3682683 5.1.3.7 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › NHL 0.56 48.0 3.05e-01 94.4% 20.0%
3245311 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.56 48.0 3.90e-01 98.1% 87.6%
5074558 212.1.1.3 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.56 49.0 3.81e-01 98.1% 73.3%
4959043 101.1.8.1 alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.56 46.0 3.46e-01 94.4% 37.7%
3597992 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.56 35.0 3.53e-01 72.2% 58.2%
3198505 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 44.0 3.25e-01 88.9% 50.3%
3472289 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.56 34.0 3.93e-01 70.4% 94.3%
3715229 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.55 34.0 3.46e-01 72.2% 58.2%
1277880 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.55 37.0 3.57e-01 83.3% 61.3%
3928448 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.55 34.0 3.55e-01 72.2% 68.9%
4088247 5.1.5.4 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N 0.55 42.0 2.49e-01 85.2% 22.4%
5078768 101.1.2.819 alpha arrays › HTH › HTH › winged helix domain › PF27231 0.55 41.0 2.85e-01 83.3% 26.9%
3212280 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 39.0 2.37e-01 79.6% 19.0%
3706282 376.1.3.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger 0.54 43.0 3.34e-01 87.0% 59.2%
3385781 2003.1.15.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Glycosyltransferase Maf N-terminal domain 0.54 39.0 2.76e-01 79.6% 75.7%
3665481 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.54 33.0 3.49e-01 77.8% 71.1%
3561493 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.54 34.0 3.54e-01 77.8% 94.3%
3229204 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.53 44.0 4.40e-01 100.0% 92.7%
3935682 64.1.1.1 beta meanders › WW domain-like › WW domain › WW domain › WW 0.52 42.0 4.13e-01 94.4% 80.0%
5030311 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 37.0 3.71e-01 72.2% 80.0%
3620234 284.1.1.0 a+b two layers › FKBP-like › FKBP-like › FKBP-like 0.51 46.0 3.29e-01 100.0% 56.9%
3668711 109.4.1.916 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_COPA_B 0.51 39.0 2.45e-01 87.0% 15.9%
5078256 298.1.1.24 a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.50 44.0 3.01e-01 98.1% 72.3%