←Back to structures
LC557520.1__BCG66278.1__X__00017
Bact-VirLC557520.1__BCG66278.1__X__00017
Identity
- Accession:
- LC557520 ↗
- Kingdom:
- phage
Quality
71.7
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Herelleviridae›
Baoshanvirus›
Staphylococcus_phage_vB_SsapH-Golestan101-M
TaxID: 2741341
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 9-83
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2go7A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.61 | 37.0 | 3.95e-01 | 92.0% | 68.7% |
| 4akgA14 | 1.20.1280.160 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.61 | 43.0 | 3.85e-01 | 74.7% | 70.6% |
| 2fi1A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.59 | 35.0 | 3.73e-01 | 96.0% | 67.2% |
| 1kl9A02 | 1.10.150.190 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2 | 0.58 | 46.0 | 4.38e-01 | 89.3% | 81.5% |
| 2ah5A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.58 | 34.0 | 3.65e-01 | 92.0% | 66.2% |
| 3ed5A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.55 | 43.0 | 4.21e-01 | 97.3% | 75.0% |
| 3smvA02 | 1.10.150.750 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.55 | 41.0 | 4.15e-01 | 90.7% | 79.2% |
| 1bqbA02 | 1.10.390.10 | Mainly Alpha › Orthogonal Bundle › Neutral Protease; domain 2 › Neutral Protease Domain 2 | 0.54 | 39.0 | 3.23e-01 | 100.0% | 40.3% |
| 3vouB00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.53 | 38.0 | 3.12e-01 | 88.0% | 41.2% |
| 3k8uA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.50 | 41.0 | 3.45e-01 | 90.7% | 98.5% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5036863 | 2006.1.1.18 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 | 0.63 | 43.0 | 3.13e-01 | 96.0% | 24.7% |
| 5053233 | 101.1.4.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like | 0.61 | 49.0 | 4.69e-01 | 85.3% | 76.5% |
| 3857352 | 592.1.1.8 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain › TRI4_N | 0.61 | 39.0 | 3.92e-01 | 96.0% | 64.0% |
| 3033359 | 3927.1.1.1 ↗ | few secondary structure elements › Late competence protein ComFB › Late competence protein ComFB › Late competence protein ComFB › ComFB | 0.52 | 43.0 | 4.03e-01 | 100.0% | 80.0% |
| 3788354 | 108.1.1.213 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand › EF_assoc_2, EF-hand_7 | 0.51 | 42.0 | 3.80e-01 | 92.0% | 92.4% |
| 3640537 | 4953.1.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like | 0.51 | 38.0 | 3.67e-01 | 100.0% | 69.4% |