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LC557520.1__BCG66356.1__X__00095
Bact-VirLC557520.1__BCG66356.1__X__00095
Identity
- Accession:
- LC557520 ↗
- Kingdom:
- phage
Quality
86.5
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Herelleviridae›
Baoshanvirus›
Staphylococcus_phage_vB_SsapH-Golestan101-M
TaxID: 2741341
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-90
Domain cluster:
rep: OR475272.1__WNM67085.1__SEA_SCHOMBER_64__00064__D3-92
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01807.26 best | Zn_ribbon_DnaG | 37.6 | 2.20e-09 | 87.5% | 62.2% |
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1d0qA00 | 3.90.580.10 | Alpha Beta › Alpha-Beta Complex › DNA Primase; Chain A › Zinc finger, CHC2-type domain | 0.89 | 73.0 | 6.91e-01 | 94.3% | 74.5% |
| 1whzA00 | 3.30.920.30 | Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. | 0.61 | 41.0 | 4.50e-01 | 90.9% | 88.4% |
| 2f4lA03 | 3.10.28.20 | Alpha Beta › Roll › Endonuclease I-creI › Acetamidase/Formamidase-like domains | 0.58 | 36.0 | 3.79e-01 | 94.3% | 68.8% |
| 4g56D00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 38.0 | 2.72e-01 | 78.4% | 82.8% |
| 4q28A00 | 3.30.160.780 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 37.0 | 3.51e-01 | 77.3% | 82.7% |
| 3a2bA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.52 | 37.0 | 3.29e-01 | 76.1% | 62.1% |
| 8hpoK01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.51 | 41.0 | 2.79e-01 | 94.3% | 81.8% |
| 1f46B00 | 3.30.1400.10 | Alpha Beta › 2-Layer Sandwich › Cell Division Protein Zipa; Chain: A, › ZipA, C-terminal FtsZ-binding domain | 0.51 | 44.0 | 3.85e-01 | 100.0% | 77.1% |
| 3v1vA00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.50 | 39.0 | 2.80e-01 | 87.5% | 68.5% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4539347 | 375.1.1.15 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 | 0.91 | 77.0 | 7.34e-01 | 94.3% | 78.0% |
| 4166935 | 375.1.1.15 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 | 0.90 | 73.0 | 6.96e-01 | 92.0% | 75.0% |
| 4680318 | 375.1.1.15 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 | 0.90 | 75.0 | 7.48e-01 | 94.3% | 85.6% |
| 8015 | 375.1.1.15 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 | 0.89 | 73.0 | 6.91e-01 | 94.3% | 74.5% |
| 3944184 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.77 | 67.0 | 6.34e-01 | 94.3% | 86.7% |
| 3928378 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.76 | 53.0 | 5.41e-01 | 76.1% | 75.3% |
| 4995759 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.70 | 57.0 | 5.97e-01 | 92.0% | 100.0% |
| 3943026 | 375.1.1.39 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Prim_Zn_Ribbon | 0.70 | 57.0 | 5.36e-01 | 90.9% | 72.5% |
| 3056107 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.67 | 60.0 | 5.66e-01 | 97.7% | 82.9% |
| 3953024 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.56 | 41.0 | 3.85e-01 | 100.0% | 61.7% |
| 3260512 | 386.1.1.71 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › SURF2 | 0.55 | 31.0 | 3.68e-01 | 76.1% | 85.5% |
| 3365468 | 844.1.1.5 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › DUF3527 | 0.55 | 45.0 | 3.31e-01 | 88.6% | 48.9% |
| 3721757 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.54 | 38.0 | 4.22e-01 | 81.8% | 100.0% |
| 5009503 | 331.3.1.7 ↗ | a+b two layers › TBP-like › Bet v1-like › Bet v1-like › COXG | 0.54 | 44.0 | 3.87e-01 | 93.2% | 80.0% |
| 3783938 | 4099.1.1.2 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spindle_Spc25 | 0.53 | 38.0 | 3.63e-01 | 86.4% | 63.5% |
| 5058218 | 312.1.1.2 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related › HIT | 0.53 | 39.0 | 3.38e-01 | 77.3% | 85.3% |
| 4480602 | 2004.1.1.199 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23,SbcC_Walker_B | 0.53 | 39.0 | 2.51e-01 | 80.7% | 26.2% |
| 3404585 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.51 | 28.0 | 3.31e-01 | 72.7% | 88.0% |
| 3332372 | 312.1.1.8 ↗ | a+b three layers › HIT-like › HIT-related › HIT-related › DcpS_C | 0.51 | 38.0 | 3.29e-01 | 83.0% | 96.8% |
| 3075185 | 386.1.1.4 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED | 0.51 | 30.0 | 3.50e-01 | 86.4% | 100.0% |
| 3384535 | 708.1.1.25 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › SWIM | 0.50 | 39.0 | 3.71e-01 | 95.5% | 70.5% |
D2
high
residues 130-214
Domain cluster:
rep: NC_042091.1__YP_009620723.1__FDJ16_gp109__00054__D127-222
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1eqnB01 | 3.90.980.10 | Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain | 0.78 | 71.0 | 6.16e-01 | 100.0% | 84.9% |
| 4edgA01 | 3.90.980.10 | Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain | 0.77 | 71.0 | 6.03e-01 | 100.0% | 81.3% |
| 2au3A02 | 3.90.980.10 | Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain | 0.76 | 69.0 | 6.01e-01 | 100.0% | 81.9% |
| 5w36B01 | 3.90.980.10 | Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain | 0.74 | 67.0 | 5.73e-01 | 100.0% | 80.6% |
| 1ei5A03 | 2.40.128.50 | Mainly Beta › Beta Barrel › Lipocalin › | 0.69 | 40.0 | 3.80e-01 | 100.0% | 49.0% |
| 6j9eJ00 | 3.30.160.560 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.65 | 35.0 | 3.88e-01 | 92.9% | 65.2% |
| 4mjgA00 | 3.30.2030.30 | Alpha Beta › 2-Layer Sandwich › TBP-like › | 0.57 | 38.0 | 2.98e-01 | 84.7% | 32.2% |
| 3holA02 | 2.40.160.90 | Mainly Beta › Beta Barrel › Porin › | 0.55 | 38.0 | 3.10e-01 | 100.0% | 37.3% |
| 4r03A00 | 2.40.128.720 | Mainly Beta › Beta Barrel › Lipocalin › | 0.55 | 38.0 | 3.48e-01 | 89.4% | 56.0% |
| 1q15A01 | 3.60.20.10 | Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain | 0.54 | 45.0 | 3.46e-01 | 92.9% | 98.0% |
| 3dtdD00 | 2.60.40.1880 | Mainly Beta › Sandwich › Immunoglobulin-like › Invasion associated locus B (IalB) protein | 0.54 | 34.0 | 2.90e-01 | 88.2% | 36.6% |
| 2hrvA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.53 | 37.0 | 3.63e-01 | 74.1% | 90.5% |
| 3eliA00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.53 | 41.0 | 3.52e-01 | 85.9% | 68.8% |
| 3tthB00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.52 | 45.0 | 3.69e-01 | 100.0% | 57.9% |
| 1xe4A01 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.51 | 44.0 | 3.65e-01 | 100.0% | 90.9% |
| 2iayA00 | 3.30.1820.10 | Alpha Beta › 2-Layer Sandwich › Lp2179-like fold › Lp2179-like | 0.51 | 31.0 | 2.86e-01 | 84.7% | 43.9% |
| 3a9gA00 | 2.120.10.30 | Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain | 0.51 | 38.0 | 2.60e-01 | 81.2% | 82.0% |
| 2iafA00 | 3.30.1330.90 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › D-3-phosphoglycerate dehydrogenase; domain 3 | 0.51 | 43.0 | 3.76e-01 | 100.0% | 75.0% |
| 4r8oA00 | 2.40.128.720 | Mainly Beta › Beta Barrel › Lipocalin › | 0.50 | 40.0 | 3.87e-01 | 97.6% | 75.5% |
| 3gy9A00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.50 | 43.0 | 3.69e-01 | 100.0% | 60.8% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3948312 | 4023.1.1.0 ↗ | a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core | 0.82 | 75.0 | 7.10e-01 | 100.0% | 84.0% |
| 4467859 | 4023.1.1.1 ↗ | a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N | 0.79 | 72.0 | 6.30e-01 | 100.0% | 84.8% |
| 3589490 | 4023.1.1.1 ↗ | a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N | 0.78 | 71.0 | 6.02e-01 | 100.0% | 84.4% |
| 4588732 | 4023.1.1.1 ↗ | a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N | 0.77 | 71.0 | 5.99e-01 | 100.0% | 85.2% |
| 4206082 | 4023.1.1.1 ↗ | a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N | 0.77 | 71.0 | 6.08e-01 | 100.0% | 81.5% |
| 4099289 | 4023.1.1.1 ↗ | a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N | 0.77 | 71.0 | 6.08e-01 | 100.0% | 80.0% |
| 4431937 | 4023.1.1.1 ↗ | a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N | 0.77 | 70.0 | 5.88e-01 | 100.0% | 78.6% |
| 4043621 | 4023.1.1.1 ↗ | a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N | 0.76 | 69.0 | 5.77e-01 | 100.0% | 82.8% |
| 1407259 | 4023.1.1.1 ↗ | a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N | 0.76 | 69.0 | 6.05e-01 | 100.0% | 83.2% |
| 3387388 | 4023.1.1.1 ↗ | a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N | 0.75 | 69.0 | 5.98e-01 | 100.0% | 84.0% |
| 4157635 | 4023.1.1.1 ↗ | a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N | 0.75 | 69.0 | 5.99e-01 | 100.0% | 83.2% |
| 4345683 | 4023.1.1.1 ↗ | a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N | 0.75 | 69.0 | 6.01e-01 | 100.0% | 82.4% |
| 4186968 | 4023.1.1.1 ↗ | a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N | 0.75 | 69.0 | 5.90e-01 | 100.0% | 77.7% |
| 4096247 | 4023.1.1.1 ↗ | a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N | 0.74 | 68.0 | 5.92e-01 | 100.0% | 81.6% |
| 4537309 | 4023.1.1.0 ↗ | a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core | 0.68 | 55.0 | 5.30e-01 | 100.0% | 77.9% |
| 4023633 | 4023.1.1.0 ↗ | a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core | 0.68 | 63.0 | 5.72e-01 | 100.0% | 82.7% |
| 4953814 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.61 | 40.0 | 4.63e-01 | 80.0% | 93.3% |
| 3939966 | 292.2.1.0 ↗ | a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain | 0.61 | 38.0 | 3.52e-01 | 85.9% | 48.2% |
| 5003263 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.61 | 39.0 | 3.48e-01 | 82.4% | 45.8% |
| 3220428 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.56 | 48.0 | 3.83e-01 | 100.0% | 81.6% |
| 5053933 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.55 | 30.0 | 3.37e-01 | 89.4% | 67.7% |
| 3725796 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.54 | 43.0 | 3.10e-01 | 89.4% | 34.9% |
| 3217858 | 220.1.1.37 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_13 | 0.54 | 37.0 | 2.91e-01 | 70.6% | 55.3% |
| 4672365 | 213.1.1.21 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › LPG_synthase_C | 0.54 | 47.0 | 3.52e-01 | 100.0% | 41.3% |
| 3411641 | 378.1.1.1 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › Endonuclease_NS | 0.54 | 48.0 | 3.42e-01 | 98.8% | 92.9% |
| 3952307 | 213.1.1.31 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_10 | 0.53 | 46.0 | 3.86e-01 | 100.0% | 74.8% |
| 1147338 | 1.1.5.5 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pico_P2A | 0.53 | 37.0 | 3.17e-01 | 74.1% | 60.6% |
| 3990949 | 2498.1.1.6 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M3 | 0.52 | 39.0 | 2.79e-01 | 81.2% | 25.4% |
| 3619122 | 5.1.3.139 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Str_synth, SGL, SSL_N | 0.51 | 42.0 | 2.88e-01 | 97.6% | 37.0% |
| 4334199 | 77.1.1.1 ↗ | beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › Lipoprotein_1 | 0.51 | 39.0 | 3.44e-01 | 82.4% | 74.4% |
| 3993690 | 216.1.1.35 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › Rgr-1_C | 0.51 | 43.0 | 3.14e-01 | 97.6% | 48.1% |
| 3208973 | 4099.1.1.4 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-O | 0.50 | 36.0 | 3.33e-01 | 100.0% | 57.0% |
| 3931297 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.50 | 40.0 | 3.49e-01 | 88.2% | 71.1% |
| 134528 | 213.1.1.27 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_7 | 0.50 | 43.0 | 3.67e-01 | 100.0% | 60.4% |