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LC557520.1__BCG66392.1__X__00131

Bact-Vir

LC557520.1__BCG66392.1__X__00131

Identity

Accession:
LC557520 ↗
Kingdom:
phage

Quality

78.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 21-99_196-270
PDB
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF23932.2 best SP10_terminator 109.0 3.80e-31 52.6% 28.6%
PF23932.2 SP10_terminator 109.2 3.50e-31 49.4% 27.5%
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fz2A00 3.30.70.1700 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Phage minor tail protein U 0.77 60.0 6.57e-01 100.0% 98.4%
2gjvA00 3.30.2000.10 Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like 0.76 60.0 6.35e-01 100.0% 91.2%
4acvA00 3.30.2000.30 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.76 53.0 5.99e-01 100.0% 92.4%
1bdfA01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.74 41.0 4.84e-01 70.8% 78.3%
5wl1A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.73 36.0 4.34e-01 76.6% 71.3%
2rjzA02 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.71 43.0 5.27e-01 100.0% 93.9%
6toaF01 3.30.2000.30 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.70 56.0 6.09e-01 99.4% 100.0%
2c1iA01 3.30.565.50 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › 0.69 30.0 3.49e-01 100.0% 55.0%
4ewtA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.68 40.0 4.60e-01 86.4% 77.4%
2x1wL02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.68 35.0 4.25e-01 76.0% 73.3%
2y3uA02 3.30.980.50 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › 0.68 42.0 4.85e-01 100.0% 85.0%
4pxdA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 39.0 4.49e-01 92.9% 76.5%
2l25A00 3.30.2000.20 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.67 55.0 5.73e-01 100.0% 93.6%
8c46A01 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 39.0 4.45e-01 85.7% 76.3%
3n5fA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 39.0 4.44e-01 86.4% 76.3%
5d4nC00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 36.0 4.41e-01 94.8% 81.6%
1o0vA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 35.0 4.12e-01 80.5% 71.8%
4hudA01 3.30.2000.40 Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser 0.65 60.0 5.40e-01 100.0% 78.1%
3pfoA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 43.0 4.62e-01 94.2% 80.5%
5xoyB02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 36.0 4.19e-01 85.7% 77.6%
4iyqA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 36.0 4.17e-01 93.5% 77.6%
3gb0A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 37.0 4.21e-01 92.9% 76.8%
3ahpA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 35.0 4.09e-01 93.5% 77.4%
2zomA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 35.0 4.08e-01 93.5% 77.6%
5uejA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 36.0 4.14e-01 92.9% 77.2%
4e98C00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 35.0 4.13e-01 93.5% 81.0%
2nuhA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 34.0 4.05e-01 94.8% 81.7%
4y6iA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 35.0 4.12e-01 93.5% 85.4%
2f7vA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 34.0 3.96e-01 92.9% 81.5%
3i4hX02 3.30.70.1900 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 31.0 3.58e-01 83.1% 74.0%
4z9eA00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.56 32.0 4.09e-01 98.7% 100.0%
3ialA01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.56 52.0 4.21e-01 100.0% 78.6%
1hc7A01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.55 50.0 4.17e-01 100.0% 79.9%
6qdwt00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.55 32.0 3.94e-01 94.2% 93.5%
5v7qT00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.55 32.0 3.86e-01 96.1% 88.8%
4afhE00 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.54 50.0 4.48e-01 100.0% 78.3%
5wy8B03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 32.0 3.66e-01 76.6% 78.6%
2cjaA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.54 49.0 3.86e-01 100.0% 75.0%
3netB01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.54 49.0 3.86e-01 100.0% 92.7%
3a32A01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.53 48.0 3.81e-01 100.0% 84.9%
2q7eA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.53 48.0 4.36e-01 100.0% 93.9%
4dzdA02 3.30.70.1210 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 2 0.52 28.0 3.10e-01 84.4% 63.4%
3u6yA00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.51 31.0 3.76e-01 98.7% 93.9%
2bg9C01 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.50 46.0 4.14e-01 100.0% 78.9%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4957584 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.81 58.0 6.62e-01 100.0% 96.5%
5040945 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.79 67.0 6.87e-01 100.0% 91.3%
5004177 304.124.1.3 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › DUF3168 0.79 61.0 6.69e-01 100.0% 97.6%
2642577 304.124.1.3 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › DUF3168 0.77 61.0 6.59e-01 100.0% 94.8%
3966645 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.76 58.0 6.37e-01 98.7% 96.0%
364035 304.124.1.1 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Phage_tail_U 0.74 60.0 6.42e-01 100.0% 97.7%
5454 304.124.1.2 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Gp37 0.73 58.0 6.21e-01 100.0% 94.8%
4988097 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.73 59.0 6.37e-01 100.0% 99.2%
3949263 304.124.1.9 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Phage_tail_terminator_9 0.73 49.0 5.86e-01 92.2% 100.0%
3387224 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.71 41.0 4.39e-01 98.7% 65.4%
4034134 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.71 55.0 6.01e-01 98.7% 98.4%
3895932 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.71 36.0 4.36e-01 74.0% 72.4%
4291659 304.124.1.8 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Phage_Mu_Gp37 0.70 58.0 6.08e-01 100.0% 95.0%
3606930 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.69 47.0 5.37e-01 100.0% 97.2%
3589225 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.66 54.0 5.74e-01 100.0% 97.0%
3970985 304.124.1.9 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Phage_tail_terminator_9 0.66 55.0 5.79e-01 100.0% 97.1%
4403880 310.3.1.8 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › T2SSM_b 0.65 43.0 4.47e-01 100.0% 70.3%
3353115 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.65 40.0 3.35e-01 100.0% 35.8%
1667689 304.25.1.0 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain 0.65 37.0 4.27e-01 93.5% 78.5%
141279 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.64 43.0 4.62e-01 93.5% 80.2%
3585212 304.124.1.0 a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.64 59.0 5.25e-01 100.0% 88.4%
4069303 304.153.1.1 a+b two layers › Alpha-beta plaits › Collagenase G catalytic helper subdomain › Collagenase G catalytic helper subdomain › ColG_sub 0.63 41.0 4.57e-01 100.0% 83.3%
3733238 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.62 40.0 4.43e-01 83.8% 80.0%
5044042 11.1.1.410 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › BatD 0.62 32.0 4.12e-01 76.6% 85.6%
3457894 304.109.1.1 a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 0.61 35.0 3.88e-01 92.9% 70.0%
3835251 304.109.1.1 a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 0.60 34.0 4.11e-01 92.9% 86.3%
3839422 304.109.1.1 a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 0.60 34.0 4.22e-01 94.8% 90.3%
4235653 304.25.1.1 a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.59 31.0 3.90e-01 85.7% 87.1%
3275804 11.1.5.62 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › CBM49 0.59 40.0 4.46e-01 90.3% 88.3%
409322 304.5.1.3 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.58 34.0 3.91e-01 92.2% 79.4%
4675688 304.109.1.1 a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 0.58 34.0 4.13e-01 94.2% 91.6%
3935811 314.1.1.2 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.58 54.0 4.14e-01 100.0% 76.7%
3583468 304.5.1.3 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.58 34.0 3.88e-01 93.5% 79.1%
4932235 304.5.1.3 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.57 34.0 3.94e-01 93.5% 84.6%
3274387 11.1.5.62 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › CBM49 0.57 35.0 4.09e-01 91.6% 86.4%
4979850 314.1.1.0 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.56 52.0 4.25e-01 100.0% 80.4%
5065326 328.1.1.0 a+b two layers › IF3-like › AlbA-like › AlbA-like 0.55 32.0 3.89e-01 98.7% 90.5%
4996592 314.1.1.2 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.53 49.0 3.78e-01 100.0% 75.9%
3933746 11.1.1.179 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_3 0.53 29.0 3.27e-01 81.8% 66.7%
3797542 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 28.0 3.22e-01 81.8% 68.2%
3509491 304.5.1.3 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › CutA1 0.53 32.0 3.67e-01 96.8% 81.8%
3705145 310.3.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.53 48.0 4.59e-01 100.0% 91.1%
4928488 314.1.1.51 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › ProRS-C_1 0.53 48.0 3.58e-01 100.0% 54.4%
4448201 304.109.1.1 a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 0.52 31.0 3.67e-01 96.1% 88.9%
3496210 11.12.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like 0.52 47.0 4.42e-01 98.7% 90.8%
4038398 314.1.1.11 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA_synthFbeta 0.51 46.0 4.25e-01 99.4% 91.5%
3823173 3887.2.1.1 a+b two layers › Yeast killer toxin-like › Antifungal protein ginkbilobin-2 › Antifungal protein ginkbilobin-2 › Stress-antifung 0.51 32.0 3.67e-01 81.2% 86.4%
991697 328.1.1.1 a+b two layers › IF3-like › AlbA-like › AlbA-like › Alba 0.51 31.0 3.76e-01 98.7% 93.9%
3952440 881.1.1.8 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PknH_C 0.50 38.0 3.77e-01 99.4% 73.4%
D2 high residues 108-186
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF23932.2 best SP10_terminator 80.4 2.10e-22 100.0% 27.5%