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LC557520.1__BCG66396.1__X__00135

Bact-Vir

LC557520.1__BCG66396.1__X__00135

Identity

Accession:
LC557520 ↗
Kingdom:
phage

Quality

64.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Baoshanvirus› Staphylococcus_phage_vB_SsapH-Golestan101-M

TaxID: 2741341

Cluster

View cluster (8 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-46
PDB
Domain cluster: rep: NC_012530.1__YP_002790789.1__lb338_phage_110__00110__D7-53
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF24040.2 best DUF7349 48.6 7.30e-13 95.6% 82.0%
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2j8gA02 2.10.270.10 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding 0.71 50.0 4.09e-01 73.3% 62.2%
2hjqA01 3.40.5.20 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › YqbF domain 0.70 53.0 5.36e-01 100.0% 87.0%
2v05A02 2.10.270.10 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding 0.66 45.0 3.09e-01 73.3% 29.6%
1ji8A01 3.30.1420.10 Alpha Beta › 2-Layer Sandwich › Dissimilatory Siroheme-sulfite Reductase; Chain: A; domain 1 › DsrC protein, N-terminal domain 0.65 51.0 5.05e-01 91.1% 89.4%
2g7cB01 2.10.270.10 Mainly Beta › Ribbon › left handed beta-beta-3-solenoid › Cholin Binding 0.65 45.0 4.00e-01 73.3% 77.3%
2e9xB01 3.40.5.50 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.58 48.0 4.35e-01 100.0% 66.7%
3erbA02 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.57 40.0 3.74e-01 77.8% 91.7%
4nkbA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.57 41.0 3.41e-01 95.6% 92.1%
2atzA00 3.90.920.20 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › HP0184-like 0.56 45.0 3.18e-01 100.0% 40.9%
3ztvA01 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.55 41.0 2.52e-01 88.9% 87.7%
2d0bA01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.55 43.0 3.68e-01 100.0% 71.9%
4rv5A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 40.0 2.72e-01 88.9% 53.1%
3erbA03 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.53 37.0 3.49e-01 77.8% 91.7%
4zpjA01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 41.0 2.74e-01 88.9% 56.5%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.53 39.0 3.82e-01 86.7% 88.0%
6qkgA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 39.0 3.08e-01 88.9% 49.5%
3td9A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.52 40.0 2.73e-01 91.1% 54.8%
ECOD (30)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2883161 702.1.1.3 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack › Choline_bind_1,Choline_bind_2 0.72 50.0 3.37e-01 73.3% 29.6%
1826876 702.1.1.3 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack › Choline_bind_1,Choline_bind_2 0.70 48.0 3.04e-01 73.3% 23.6%
4802915 702.1.1.4 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack 0.67 47.0 3.98e-01 73.3% 68.9%
4975580 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.64 53.0 4.91e-01 100.0% 73.3%
4596105 702.1.1.1 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack › Choline_bind_1 0.64 45.0 3.39e-01 75.6% 47.5%
5035097 4076.4.1.0 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.64 49.0 4.95e-01 100.0% 91.1%
5072099 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.63 52.0 4.81e-01 100.0% 73.3%
4979633 4076.3.1.8 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › PSF2_N 0.62 52.0 4.69e-01 100.0% 67.7%
4982789 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.62 51.0 4.59e-01 100.0% 66.2%
4683204 101.35.1.5 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 0.61 41.0 3.23e-01 71.1% 47.6%
2879522 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.61 48.0 4.08e-01 100.0% 73.9%
4956745 4076.4.1.0 ↗ a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain 0.61 50.0 4.95e-01 100.0% 88.0%
3939178 304.48.1.37 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_2 0.61 49.0 3.40e-01 100.0% 60.0%
5049679 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.61 51.0 4.71e-01 100.0% 73.3%
5009920 2004.1.1.308 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.60 45.0 2.88e-01 95.6% 24.4%
5044096 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.60 47.0 4.68e-01 97.8% 86.0%
4946969 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.60 50.0 4.93e-01 100.0% 90.0%
5019734 4076.3.1.5 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › Gins51_C 0.60 49.0 4.81e-01 100.0% 88.0%
4021638 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.59 48.0 4.38e-01 100.0% 67.7%
4509443 4076.3.1.8 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › PSF2_N 0.59 48.0 4.38e-01 100.0% 67.7%
5036241 4076.3.1.0 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain 0.59 48.0 4.37e-01 100.0% 67.7%
3730580 4076.3.1.8 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › PSF2_N 0.59 47.0 4.33e-01 100.0% 67.7%
4304365 4076.3.1.8 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › PSF2_N 0.58 47.0 4.23e-01 100.0% 62.9%
4950628 3740.1.1.4 ↗ alpha arrays › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › F420-reducing hydrogenase subunit beta › FrhB_FdhB_C 0.58 45.0 2.96e-01 100.0% 85.0%
3060783 4076.3.1.8 ↗ a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › PSF2_N 0.57 47.0 4.38e-01 100.0% 72.6%
5057417 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 46.0 3.90e-01 100.0% 97.6%
3574029 389.1.2.0 ↗ few secondary structure elements › EGF-like › EGF-related › Complement control module/SCR domain 0.54 36.0 3.36e-01 71.1% 92.3%
259870 2003.1.2.18 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.53 39.0 2.45e-01 86.7% 40.1%
1270868 244.1.1.6 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › Amino_oxidase 0.53 39.0 2.44e-01 86.7% 39.0%
4408513 2499.1.1.1 ↗ a/b three-layered sandwiches › Subtilisin-like › Subtilisin-like › Subtilisin-like › Peptidase_S8 0.51 41.0 2.44e-01 95.6% 26.1%