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LC576631.1__BCK59779.1__X__00084
Bact-VirLC576631.1__BCK59779.1__X__00084
Identity
- Accession:
- LC576631 ↗
- Kingdom:
- phage
Quality
79.0
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Herelleviridae›
Silviavirus›
Staphylococcus_phage_vB_SauH_DELF3
TaxID: 2766478
Cluster
View cluster (8 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 45-141
Domain cluster:
representative
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2vlaA01 | 1.10.10.2080 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.61 | 35.0 | 3.87e-01 | 76.3% | 70.5% |
| 4nufA02 | 1.10.565.10 | Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor | 0.59 | 44.0 | 3.68e-01 | 80.4% | 89.9% |
| 3vw4A01 | 1.10.340.50 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › | 0.59 | 34.0 | 3.50e-01 | 76.3% | 58.7% |
| 3lynB00 | 1.20.150.10 | Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein | 0.58 | 43.0 | 4.04e-01 | 79.4% | 91.1% |
| 1fafA00 | 1.10.287.110 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › DnaJ domain | 0.55 | 32.0 | 3.59e-01 | 97.9% | 72.2% |
| 3vkgA09 | 1.20.920.30 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › | 0.55 | 40.0 | 3.51e-01 | 76.3% | 54.2% |
| 1ez0B01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.53 | 43.0 | 3.09e-01 | 90.7% | 84.3% |
| 4omhB00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.53 | 44.0 | 3.26e-01 | 95.9% | 90.8% |
| 2gfhA02 | 1.20.120.710 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain | 0.53 | 40.0 | 4.24e-01 | 100.0% | 93.0% |
| 1e3pA02 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.51 | 38.0 | 4.02e-01 | 95.9% | 91.6% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3693234 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.61 | 34.0 | 3.78e-01 | 96.9% | 69.3% |
| 3937527 | 170.1.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C | 0.59 | 39.0 | 4.02e-01 | 78.4% | 69.5% |
| 4203260 | 524.1.1.4 ↗ | alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p › SBE2_C | 0.57 | 44.0 | 3.83e-01 | 84.5% | 64.4% |
| 3293600 | 101.1.1.65 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 | 0.56 | 35.0 | 3.47e-01 | 76.3% | 59.0% |
| 3436085 | 101.1.1.65 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 | 0.56 | 35.0 | 3.56e-01 | 96.9% | 60.0% |
| 5030057 | 4040.1.1.1 ↗ | alpha bundles › Fic-like › Fic-like › Fic-like › Fic | 0.56 | 41.0 | 3.15e-01 | 79.4% | 82.8% |
| 3065996 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.56 | 41.0 | 3.70e-01 | 76.3% | 60.3% |
| 3486418 | 170.1.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C | 0.56 | 37.0 | 3.82e-01 | 78.4% | 69.5% |
| 3309955 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.56 | 38.0 | 3.86e-01 | 84.5% | 69.0% |
| 5032503 | 4040.1.1.1 ↗ | alpha bundles › Fic-like › Fic-like › Fic-like › Fic | 0.55 | 41.0 | 3.10e-01 | 79.4% | 85.2% |
| 4993305 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.54 | 40.0 | 3.67e-01 | 78.4% | 98.5% |
| 1712709 | 148.1.3.45 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DYN_lid | 0.54 | 41.0 | 3.70e-01 | 78.4% | 61.2% |
| 3329178 | 4953.1.1.24 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › Tim17 | 0.53 | 35.0 | 3.83e-01 | 72.2% | 82.5% |
| 4927432 | 616.1.1.0 ↗ | alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain | 0.53 | 41.0 | 4.41e-01 | 91.8% | 100.0% |
| 3691381 | 101.1.1.65 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 | 0.53 | 34.0 | 3.76e-01 | 99.0% | 84.0% |
| 4967808 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.53 | 39.0 | 3.51e-01 | 78.4% | 83.6% |
| 3832324 | 101.1.1.65 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 | 0.53 | 35.0 | 3.09e-01 | 76.3% | 45.5% |
| 3186625 | 212.1.1.34 ↗ | a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › EFL1 | 0.52 | 44.0 | 3.47e-01 | 95.9% | 73.6% |
| 3432597 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.52 | 37.0 | 3.66e-01 | 100.0% | 68.6% |
| 3510492 | 604.12.1.60 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Hpre_diP_synt_I | 0.51 | 38.0 | 3.80e-01 | 89.7% | 76.0% |
| 3587011 | 604.39.1.23 ↗ | alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters › Hpre_diP_synt_I | 0.51 | 41.0 | 3.46e-01 | 89.7% | 73.7% |
| 4962844 | 604.4.1.10 ↗ | alpha bundles › Spectrin repeat-like › Alpha-hemoglobin stabilizing protein AHSP › Alpha-hemoglobin stabilizing protein AHSP › PF26679 | 0.50 | 41.0 | 4.10e-01 | 94.8% | 87.0% |