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LC597490.1__BCO16097.1__X__00044
Bact-VirLC597490.1__BCO16097.1__X__00044
Identity
- Accession:
- LC597490 ↗
- Kingdom:
- phage
Quality
92.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-116
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3p8bB02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.84 | 45.0 | 6.10e-01 | 78.8% | 98.4% |
| 3askA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.77 | 42.0 | 5.65e-01 | 76.1% | 100.0% |
| 4iupA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.75 | 47.0 | 5.84e-01 | 79.6% | 98.6% |
| 5ygbA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.74 | 43.0 | 5.07e-01 | 80.5% | 81.2% |
| 1jb0E00 | 2.30.30.50 | Mainly Beta › Roll › SH3 type barrels. › | 0.72 | 44.0 | 5.54e-01 | 73.5% | 100.0% |
| 6az1E03 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.71 | 41.0 | 5.09e-01 | 85.8% | 91.7% |
| 2lccA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 41.0 | 4.87e-01 | 75.2% | 85.5% |
| 2fhdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.70 | 37.0 | 4.83e-01 | 73.5% | 93.5% |
| 5zwzA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 43.0 | 5.32e-01 | 76.1% | 100.0% |
| 3m9qA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 43.0 | 5.29e-01 | 77.9% | 98.6% |
| 1n27A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 42.0 | 4.52e-01 | 93.8% | 72.9% |
| 4lduA03 | 2.30.30.1040 | Mainly Beta › Roll › SH3 type barrels. › | 0.67 | 40.0 | 5.14e-01 | 77.0% | 100.0% |
| 4b6mB00 | 2.30.30.190 | Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain | 0.66 | 43.0 | 5.12e-01 | 75.2% | 94.9% |
| 4kktA02 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.62 | 40.0 | 4.19e-01 | 83.2% | 70.5% |
| 1whlA00 | 2.30.30.190 | Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain | 0.60 | 45.0 | 4.91e-01 | 79.6% | 93.7% |
| 3fppA01 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.60 | 40.0 | 4.13e-01 | 82.3% | 72.1% |
| 2oq5A02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.59 | 30.0 | 3.16e-01 | 77.9% | 51.9% |
| 1vloA04 | 2.40.30.110 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains | 0.59 | 34.0 | 3.73e-01 | 85.0% | 69.2% |
| 2db9A01 | 3.90.70.200 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Plus-3 domain | 0.56 | 41.0 | 3.92e-01 | 92.9% | 64.7% |
| 3k6yA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.56 | 38.0 | 3.93e-01 | 85.8% | 72.9% |
| 7xpkA01 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.56 | 43.0 | 3.96e-01 | 80.5% | 76.6% |
| 4ic5A02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.53 | 39.0 | 4.09e-01 | 85.0% | 83.7% |
ECOD (47)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3347795 | 4.1.1.94 ↗ | beta barrels › SH3 › SH3 › SH3 › SAWADEE | 0.74 | 47.0 | 5.53e-01 | 80.5% | 90.0% |
| 3441143 | 4.1.1.94 ↗ | beta barrels › SH3 › SH3 › SH3 › SAWADEE | 0.74 | 47.0 | 5.07e-01 | 78.8% | 74.0% |
| 3256053 | 4.8.1.10 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like | 0.72 | 48.0 | 5.33e-01 | 94.7% | 84.4% |
| 4306285 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 44.0 | 5.44e-01 | 86.7% | 98.6% |
| 5036802 | 205.1.1.1 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4 | 0.71 | 36.0 | 3.32e-01 | 73.5% | 39.3% |
| 2605151 | 4.25.1.1 ↗ | beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › Auxin_resp | 0.68 | 44.0 | 5.34e-01 | 81.4% | 100.0% |
| 3932647 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.68 | 44.0 | 4.97e-01 | 78.8% | 87.1% |
| 3550699 | 4.8.1.10 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like | 0.67 | 46.0 | 5.05e-01 | 96.5% | 84.2% |
| 3886492 | 4.1.1.154 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF4772 | 0.67 | 44.0 | 5.33e-01 | 92.9% | 100.0% |
| 3476615 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 44.0 | 5.25e-01 | 81.4% | 100.0% |
| 4608778 | 1.1.7.107 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25965 | 0.64 | 40.0 | 3.92e-01 | 79.6% | 58.3% |
| 3873627 | 4.1.1.354 ↗ | beta barrels › SH3 › SH3 › SH3 › CAP_GLY, PF28930 | 0.63 | 48.0 | 4.81e-01 | 78.8% | 98.3% |
| 3187511 | 4.1.1.85 ↗ | beta barrels › SH3 › SH3 › SH3 › MTR4_beta-barrel | 0.63 | 44.0 | 4.22e-01 | 71.7% | 76.9% |
| 5079843 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.63 | 36.0 | 4.57e-01 | 71.7% | 96.9% |
| 4229837 | 4.1.1.354 ↗ | beta barrels › SH3 › SH3 › SH3 › CAP_GLY, PF28930 | 0.63 | 48.0 | 3.99e-01 | 78.8% | 61.1% |
| 3967199 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.63 | 43.0 | 4.47e-01 | 79.6% | 75.2% |
| 5056905 | 1.1.7.28 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel | 0.62 | 39.0 | 4.32e-01 | 74.3% | 78.9% |
| 3622641 | 4.1.1.85 ↗ | beta barrels › SH3 › SH3 › SH3 › MTR4_beta-barrel | 0.61 | 43.0 | 4.25e-01 | 72.6% | 75.8% |
| 3940546 | 4.1.1.85 ↗ | beta barrels › SH3 › SH3 › SH3 › MTR4_beta-barrel | 0.61 | 42.0 | 4.23e-01 | 70.8% | 76.5% |
| 3404983 | 4.1.1.12 ↗ | beta barrels › SH3 › SH3 › SH3 › PWWP | 0.61 | 41.0 | 4.22e-01 | 95.6% | 71.8% |
| 3573739 | 4.1.1.85 ↗ | beta barrels › SH3 › SH3 › SH3 › MTR4_beta-barrel | 0.60 | 42.0 | 4.22e-01 | 70.8% | 76.5% |
| 3387966 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.60 | 35.0 | 4.03e-01 | 79.6% | 76.5% |
| 5012955 | 1.1.7.128 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DUF515 | 0.60 | 39.0 | 4.44e-01 | 82.3% | 87.1% |
| 3973637 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.60 | 40.0 | 4.24e-01 | 81.4% | 76.0% |
| 3472685 | 3324.1.1.2 ↗ | extended segments › Helical arch in Ski2-like helicases › Helical arch in Ski2-like helicases › Helical arch in Ski2-like helicases | 0.59 | 51.0 | 3.80e-01 | 91.2% | 63.0% |
| 3941958 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.59 | 42.0 | 4.62e-01 | 83.2% | 91.1% |
| 3908789 | 4.1.1.354 ↗ | beta barrels › SH3 › SH3 › SH3 › CAP_GLY, PF28930 | 0.59 | 47.0 | 3.49e-01 | 85.0% | 41.1% |
| 3828614 | 4.1.1.158 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF3444 | 0.58 | 46.0 | 4.69e-01 | 82.3% | 87.3% |
| 3199225 | 4.1.1.18 ↗ | beta barrels › SH3 › SH3 › SH3 › CAP_GLY | 0.57 | 45.0 | 4.69e-01 | 85.0% | 88.6% |
| 4151877 | 1.1.7.79 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Beta-barrel_RND | 0.57 | 41.0 | 4.22e-01 | 82.3% | 79.0% |
| 3230113 | 4.1.1.315 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_12, XRN1_D1 | 0.57 | 51.0 | 3.49e-01 | 98.2% | 58.2% |
| 3460287 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.57 | 44.0 | 3.91e-01 | 81.4% | 81.9% |
| 3836457 | 4.1.1.20 ↗ | beta barrels › SH3 › SH3 › SH3 › BAH | 0.55 | 43.0 | 3.94e-01 | 82.3% | 67.3% |
| 3974575 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.55 | 38.0 | 4.12e-01 | 89.4% | 82.7% |
| 4501781 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.55 | 40.0 | 4.21e-01 | 75.2% | 94.0% |
| 5062120 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 43.0 | 4.44e-01 | 83.2% | 89.5% |
| 3184389 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 44.0 | 3.81e-01 | 86.7% | 71.4% |
| 3721700 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 42.0 | 3.74e-01 | 82.3% | 70.6% |
| 3971620 | 1.1.7.88 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 | 0.54 | 46.0 | 4.15e-01 | 90.3% | 80.7% |
| 3971757 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.54 | 43.0 | 4.24e-01 | 84.1% | 80.0% |
| 3949068 | 1.1.7.88 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 | 0.54 | 47.0 | 4.41e-01 | 95.6% | 78.6% |
| 4266069 | 1.1.7.88 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 | 0.54 | 38.0 | 3.95e-01 | 72.6% | 83.8% |
| 2855767 | 4.1.1.4 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW,Ribosomal_L27e | 0.53 | 46.0 | 4.42e-01 | 91.2% | 99.2% |
| 3264469 | 4.1.1.309 ↗ | beta barrels › SH3 › SH3 › SH3 › MRP-S34 | 0.53 | 38.0 | 4.26e-01 | 88.5% | 98.8% |
| 3931161 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.52 | 41.0 | 4.10e-01 | 81.4% | 80.9% |
| 4391878 | 1.1.7.88 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 | 0.52 | 46.0 | 4.11e-01 | 95.6% | 85.8% |
| 4072524 | 1.1.7.88 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 | 0.51 | 45.0 | 4.62e-01 | 95.6% | 99.1% |
D2
medium
residues 120-151
Domain cluster:
representative
CATH (50)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1l3iA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.74 | 59.0 | 3.72e-01 | 100.0% | 16.8% |
| 2yxdA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.74 | 58.0 | 3.72e-01 | 100.0% | 17.3% |
| 3butA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.70 | 48.0 | 3.22e-01 | 100.0% | 17.6% |
| 3e05B00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.69 | 54.0 | 3.39e-01 | 100.0% | 16.1% |
| 2pgeA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.67 | 47.0 | 3.19e-01 | 100.0% | 17.3% |
| 3ks7A02 | 2.60.120.230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.67 | 54.0 | 3.47e-01 | 100.0% | 79.3% |
| 1o54A02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.67 | 50.0 | 3.26e-01 | 100.0% | 17.6% |
| 1whqA01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.67 | 46.0 | 3.64e-01 | 100.0% | 31.0% |
| 3hm2A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.66 | 51.0 | 3.34e-01 | 100.0% | 18.1% |
| 2hj1A00 | 3.10.20.280 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › RnfH-like | 0.65 | 40.0 | 3.04e-01 | 100.0% | 23.4% |
| 2bhgA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.65 | 47.0 | 3.63e-01 | 87.5% | 30.4% |
| 4aghA00 | 2.30.31.10 | Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A | 0.65 | 48.0 | 3.71e-01 | 84.4% | 43.8% |
| 1ya5T01 | 2.20.160.10 | Mainly Beta › Single Sheet › titin filament fold › titin domain like | 0.64 | 47.0 | 3.61e-01 | 87.5% | 39.3% |
| 3mb5A02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.62 | 45.0 | 2.99e-01 | 100.0% | 24.4% |
| 5axmB00 | 3.30.70.3000 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › tRNA(His) guanylyltransferase (Thg1) | 0.62 | 49.0 | 3.04e-01 | 100.0% | 44.4% |
| 1cjcA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.62 | 44.0 | 2.73e-01 | 84.4% | 15.4% |
| 3aonA00 | 1.10.287.3240 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.61 | 43.0 | 2.77e-01 | 81.2% | 17.0% |
| 4inaA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.61 | 48.0 | 3.07e-01 | 100.0% | 77.2% |
| 1m6uA00 | 2.60.40.1390 | Mainly Beta › Sandwich › Immunoglobulin-like › NDT80 DNA-binding domain | 0.60 | 50.0 | 2.97e-01 | 100.0% | 48.7% |
| 2xzmJ00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.60 | 47.0 | 3.35e-01 | 93.8% | 77.1% |
| 6gdxA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 45.0 | 3.36e-01 | 100.0% | 86.0% |
| 4go6B01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 41.0 | 3.79e-01 | 96.9% | 51.7% |
| 4noiA01 | 3.30.1360.10 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit | 0.59 | 43.0 | 3.12e-01 | 100.0% | 26.2% |
| 5n1tA03 | 3.90.760.10 | Alpha Beta › Alpha-Beta Complex › Flavocytochrome C Sulfide Dehydrogenase; Chain A Domain 3 › Flavocytochrome c sulphide dehydrogenase, flavin-binding domain | 0.59 | 41.0 | 3.60e-01 | 96.9% | 57.7% |
| 6gp1A00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.58 | 37.0 | 3.08e-01 | 100.0% | 27.7% |
| 6tmfM00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.58 | 50.0 | 3.52e-01 | 100.0% | 76.5% |
| 4l8nA03 | 3.30.160.670 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.57 | 40.0 | 2.80e-01 | 100.0% | 19.5% |
| 1cx8A01 | 3.40.630.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases | 0.57 | 44.0 | 2.60e-01 | 100.0% | 9.8% |
| 2ql8A00 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.57 | 43.0 | 2.94e-01 | 100.0% | 22.1% |
| 3hrzB01 | 2.20.130.20 | Mainly Beta › Single Sheet › S-adenosyl-L-methionine-dependent methyltransferases › | 0.56 | 45.0 | 3.61e-01 | 93.8% | 39.5% |
| 2z13A00 | 2.30.29.170 | Mainly Beta › Roll › PH-domain like › | 0.56 | 41.0 | 3.03e-01 | 96.9% | 80.3% |
| 4ozjA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.56 | 46.0 | 3.32e-01 | 100.0% | 93.3% |
| 4rx6D00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 42.0 | 3.10e-01 | 96.9% | 95.3% |
| 2znhA03 | 6.20.40.10 | Special › Other non-globular › Porin MspA ribbon fold › | 0.54 | 42.0 | 3.88e-01 | 100.0% | 66.0% |
| 2hqlA01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 43.0 | 3.19e-01 | 100.0% | 33.0% |
| 6toaE01 | 2.40.10.270 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein | 0.54 | 39.0 | 3.06e-01 | 96.9% | 31.6% |
| 3o0lA00 | 2.60.40.3230 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 39.0 | 2.99e-01 | 96.9% | 31.2% |
| 2xxlA03 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.54 | 37.0 | 2.64e-01 | 78.1% | 85.4% |
| 1a6aB01 | 3.10.320.10 | Alpha Beta › Roll › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 › Class II Histocompatibility Antigen, M Beta Chain; Chain B, domain 1 | 0.53 | 39.0 | 3.10e-01 | 93.8% | 33.7% |
| 4mh4A02 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.53 | 40.0 | 3.09e-01 | 100.0% | 33.0% |
| 3bzwF00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.53 | 39.0 | 2.46e-01 | 90.6% | 52.7% |
| 4qclA02 | 3.30.70.2820 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.53 | 45.0 | 3.12e-01 | 100.0% | 67.6% |
| 7o4xA01 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 43.0 | 3.11e-01 | 96.9% | 53.5% |
| 6lofA00 | 2.40.155.10 | Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein | 0.52 | 40.0 | 2.71e-01 | 90.6% | 21.6% |
| 4f0aB02 | 3.30.2460.20 | Alpha Beta › 2-Layer Sandwich › Endo-n-acetylneuraminidase fold › Wnt (Wingless and Int-1), C-terminal domain | 0.52 | 36.0 | 3.23e-01 | 100.0% | 94.1% |
| 2b9dA01 | 3.30.160.330 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 39.0 | 3.77e-01 | 100.0% | 61.5% |
| 1j2vA00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 41.0 | 2.97e-01 | 96.9% | 56.4% |
| 2bs2B01 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.51 | 42.0 | 2.98e-01 | 100.0% | 29.2% |
| 3ddcB00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.51 | 43.0 | 2.94e-01 | 100.0% | 30.8% |
| 3icsA02 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.50 | 40.0 | 2.47e-01 | 100.0% | 12.4% |
ECOD (50)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3912477 | 5001.1.1.5 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 | 0.80 | 47.0 | 2.68e-01 | 100.0% | 5.6% |
| 4985875 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.78 | 60.0 | 5.48e-01 | 96.9% | 62.0% |
| 3391461 | 3308.2.1.1 ↗ | beta duplicates or obligate multimers › periplasmic lysozyme inhibitor of I-type lysozyme-like › XAC2610 protein › XAC2610 protein › 4_1_CTD | 0.76 | 51.0 | 3.89e-01 | 100.0% | 29.3% |
| 4961364 | 2003.1.5.179 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PF30636 | 0.73 | 58.0 | 3.74e-01 | 100.0% | 18.3% |
| 3701882 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.72 | 52.0 | 3.72e-01 | 96.9% | 26.3% |
| 3645476 | 295.1.1.1 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PC4 | 0.70 | 52.0 | 3.88e-01 | 93.8% | 31.0% |
| 4351239 | 4967.1.1.6 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Intron_maturas2 | 0.70 | 47.0 | 3.17e-01 | 100.0% | 16.9% |
| 3380640 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.70 | 48.0 | 2.88e-01 | 100.0% | 9.6% |
| 3486945 | 319.1.1.0 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones | 0.67 | 47.0 | 3.14e-01 | 100.0% | 16.9% |
| 3472421 | 319.1.1.1 ↗ | beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 | 0.65 | 45.0 | 3.01e-01 | 100.0% | 16.9% |
| 4979129 | 324.1.1.1 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC | 0.64 | 50.0 | 3.38e-01 | 100.0% | 21.5% |
| 3703249 | 306.3.1.1 ↗ | a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 | 0.63 | 49.0 | 3.48e-01 | 96.9% | 24.2% |
| 3691484 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.63 | 48.0 | 2.98e-01 | 96.9% | 25.7% |
| 4777486 | 11.1.1.1386 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF28858, PF28861 | 0.63 | 47.0 | 3.40e-01 | 100.0% | 26.3% |
| 5056319 | 177.1.1.0 ↗ | alpha bundles › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease › Phospholipase C/P1 nuclease | 0.62 | 50.0 | 3.11e-01 | 100.0% | 16.2% |
| 3709357 | 2003.1.1.59 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_5 | 0.62 | 45.0 | 2.83e-01 | 100.0% | 11.9% |
| 3397147 | 11.1.1.9 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N | 0.62 | 53.0 | 3.45e-01 | 100.0% | 66.2% |
| 4946616 | 512.1.1.2 ↗ | a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd | 0.60 | 45.0 | 3.44e-01 | 100.0% | 33.3% |
| 3251044 | 242.1.1.2 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_2 | 0.60 | 41.0 | 2.72e-01 | 100.0% | 14.3% |
| 5034346 | 207.2.1.13 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › NosD | 0.60 | 45.0 | 2.69e-01 | 100.0% | 12.0% |
| 3474593 | 216.1.1.0 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like | 0.59 | 49.0 | 3.07e-01 | 100.0% | 18.8% |
| 3503534 | 5057.1.1.1 ↗ | alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb | 0.59 | 40.0 | 2.65e-01 | 100.0% | 15.2% |
| 4997962 | 304.139.1.2 ↗ | a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs | 0.59 | 47.0 | 2.88e-01 | 96.9% | 11.9% |
| 5074082 | 11.1.1.9 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N | 0.58 | 42.0 | 2.95e-01 | 96.9% | 26.2% |
| 3982740 | 5086.1.1.190 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › OEP | 0.58 | 45.0 | 2.84e-01 | 100.0% | 15.0% |
| 5050213 | 192.2.1.87 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › ATP-synt_D | 0.57 | 49.0 | 3.03e-01 | 100.0% | 16.8% |
| 329607 | 5084.5.1.4 ↗ | beta barrels › Outer membrane meander beta-barrels › Porins › Porin › OprD | 0.57 | 47.0 | 4.05e-01 | 100.0% | 58.2% |
| 3741228 | 323.1.1.3 ↗ | a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding | 0.56 | 41.0 | 2.32e-01 | 96.9% | 11.0% |
| 5035417 | 3010.1.1.0 ↗ | a/b three-layered sandwiches › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains | 0.56 | 42.0 | 3.16e-01 | 100.0% | 27.4% |
| 3654114 | 2484.1.1.26 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Piwi | 0.56 | 44.0 | 2.77e-01 | 100.0% | 18.1% |
| 5007619 | 3010.1.1.2 ↗ | a/b three-layered sandwiches › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › Lon_C | 0.56 | 39.0 | 3.03e-01 | 100.0% | 70.0% |
| 3740450 | 328.1.1.3 ↗ | a+b two layers › IF3-like › AlbA-like › AlbA-like › Rpp20 | 0.55 | 42.0 | 3.16e-01 | 100.0% | 28.9% |
| 3496677 | 3315.1.1.1 ↗ | a+b complex topology › Insertion domain in O-GlcNAc transferase › Insertion domain in O-GlcNAc transferase › Insertion domain in O-GlcNAc transferase › Glyco_transf_41 | 0.54 | 41.0 | 2.94e-01 | 100.0% | 26.1% |
| 3969252 | 324.1.1.1 ↗ | a+b two layers › OsmC-like › OsmC-like › OsmC-like › OsmC | 0.54 | 37.0 | 2.56e-01 | 93.8% | 16.3% |
| 3725152 | 376.1.3.11 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › zf-HC5HC2H_2 | 0.54 | 39.0 | 2.75e-01 | 81.2% | 72.8% |
| 4126255 | 4967.1.1.25 ↗ | alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Intron_maturas2+MatK_N | 0.54 | 43.0 | 2.58e-01 | 100.0% | 38.5% |
| 2772633 | 71.1.1.15 ↗ | beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › UCP033729 | 0.54 | 37.0 | 2.43e-01 | 96.9% | 13.5% |
| 2997715 | 11.13.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Leukocidin-like › Leukocidin-like › Leukocidin | 0.54 | 40.0 | 2.45e-01 | 93.8% | 16.8% |
| 4856794 | 304.112.1.0 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain | 0.53 | 42.0 | 3.32e-01 | 100.0% | 39.0% |
| 3754362 | 3426.1.1.0 ↗ | beta meanders › Telethonin › Telethonin › Telethonin | 0.52 | 40.0 | 3.53e-01 | 100.0% | 60.0% |
| 3701672 | 2004.1.1.26 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin | 0.52 | 40.0 | 2.67e-01 | 100.0% | 18.8% |
| 4172289 | 230.1.1.5 ↗ | a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 | 0.52 | 41.0 | 2.91e-01 | 100.0% | 31.7% |
| 5067499 | 1.1.8.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain | 0.52 | 40.0 | 2.87e-01 | 100.0% | 50.8% |
| 4989866 | 205.1.1.17 ↗ | a+b two layers › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › 4Fe-4S ferredoxin › Fer4_11 | 0.52 | 39.0 | 2.53e-01 | 100.0% | 78.6% |
| 4886985 | 7523.1.1.16 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › DctP | 0.52 | 39.0 | 2.77e-01 | 84.4% | 23.2% |
| 3592605 | 298.1.1.0 ↗ | a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | 0.51 | 41.0 | 2.70e-01 | 100.0% | 18.9% |
| 5036805 | 3010.1.1.2 ↗ | a/b three-layered sandwiches › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › C-terminal subdomain in Lon-related proteases catalytic domains › Lon_C | 0.50 | 37.0 | 2.95e-01 | 100.0% | 80.0% |
| 4281699 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.50 | 42.0 | 3.30e-01 | 100.0% | 42.7% |
| 4990821 | 7571.1.1.1 ↗ | a/b three-layered sandwiches › Formyltransferase › Formyltransferase › Formyltransferase › Formyl_trans_N | 0.50 | 40.0 | 2.43e-01 | 100.0% | 15.6% |
| 3733648 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 34.0 | 2.20e-01 | 100.0% | 11.3% |