←Back to structures

LC597490.1__BCO16233.1__X__00180

Bact-Vir

LC597490.1__BCO16233.1__X__00180

Identity

Accession:
LC597490 ↗
Kingdom:
phage

Quality

70.5 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bacillus_phage_vB_BceM_WH1

TaxID: 2795294

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-89
PDB
Domain cluster: rep: IMGVR_UViG_3300020473_000086-3300020473-Ga0211625_1000100654__D5-75
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2p4tA00 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.79 48.0 5.69e-01 85.4% 87.9%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 45.0 5.36e-01 84.1% 83.9%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.73 46.0 5.58e-01 90.2% 98.1%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.73 53.0 5.51e-01 100.0% 81.8%
3pmiA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 46.0 5.14e-01 85.4% 83.1%
4lduA03 2.30.30.1040 Mainly Beta › Roll › SH3 type barrels. › 0.66 49.0 5.33e-01 82.9% 92.6%
1tg0A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 46.0 5.03e-01 85.4% 92.4%
6gbuD00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 46.0 5.10e-01 87.8% 96.9%
2kymA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 45.0 4.38e-01 90.2% 67.7%
1vwxM01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 48.0 4.79e-01 100.0% 81.2%
2aj2A01 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.60 44.0 4.19e-01 98.8% 66.0%
2k5iA01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.57 43.0 4.28e-01 92.7% 79.8%
1pqzA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.56 40.0 3.43e-01 76.8% 79.6%
7t8tA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 44.0 3.90e-01 90.2% 93.1%
4n4iA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 51.0 4.96e-01 100.0% 91.1%
1kcgC00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.54 39.0 3.16e-01 78.0% 88.8%
6ro0B02 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 38.0 3.47e-01 76.8% 57.3%
4ak1A02 2.30.30.1270 Mainly Beta › Roll › SH3 type barrels. › 0.51 33.0 3.61e-01 74.4% 82.8%
3e99A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 38.0 3.21e-01 80.5% 80.4%
4a27A01 3.90.180.10 Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain 0.51 42.0 3.49e-01 95.1% 75.3%
2klaA00 3.30.420.130 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Dinitrogenase iron-molybdenum cofactor biosynthesis domain 0.51 35.0 3.25e-01 72.0% 89.6%
1ewiA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 36.0 3.28e-01 75.6% 83.3%
2q07A02 3.10.450.90 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › ArcTGT, C2 domain 0.50 29.0 3.15e-01 73.2% 67.7%
3a3jA02 2.60.410.10 Mainly Beta › Sandwich › Peptidoglycan synthesis regulatory factor (PBP3), Domain 2 › D-Ala-D-Ala carboxypeptidase, C-terminal domain 0.50 35.0 3.41e-01 73.2% 89.1%
3fruA01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.50 36.0 2.87e-01 76.8% 84.7%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
567 4.1.1.48 ↗ beta barrels › SH3 › SH3 › SH3 › DHFR_2 0.79 48.0 5.72e-01 85.4% 89.5%
3344796 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.75 50.0 5.06e-01 89.0% 68.7%
4028731 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 50.0 5.55e-01 85.4% 89.2%
3942573 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 46.0 5.37e-01 92.7% 94.8%
3252839 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 51.0 5.39e-01 91.5% 86.7%
3646890 4.25.1.1 ↗ beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › Auxin_resp 0.67 50.0 4.95e-01 84.1% 75.3%
3255902 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 44.0 4.46e-01 87.8% 68.8%
3479042 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 45.0 4.88e-01 82.9% 84.3%
3217772 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 48.0 4.83e-01 97.6% 80.0%
3404157 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.62 57.0 4.77e-01 100.0% 94.8%
3214131 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 52.0 5.33e-01 98.8% 92.5%
3482646 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 49.0 3.63e-01 98.8% 34.5%
3242957 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 55.0 4.60e-01 100.0% 80.7%
4951885 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 52.0 4.92e-01 100.0% 88.0%
3482359 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 51.0 4.64e-01 95.1% 83.6%
3554670 4.1.1.340 ↗ beta barrels › SH3 › SH3 › SH3 › PF28930 0.59 51.0 4.89e-01 95.1% 86.3%
3908789 4.1.1.354 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY, PF28930 0.58 52.0 3.61e-01 100.0% 47.0%
3830083 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.57 52.0 4.40e-01 100.0% 80.7%
3709896 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 42.0 4.24e-01 91.5% 82.4%
3266526 234.3.1.0 ↗ a+b two layers › Microbial ribonucleases-like › Colicin D nuclease domain › Colicin D nuclease domain 0.54 38.0 3.32e-01 75.6% 61.9%
4180654 2.6.1.1 ↗ beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.54 37.0 3.13e-01 72.0% 62.1%
3456015 1.1.1.28 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp, TAXi_C, TAXi_N 0.51 35.0 2.32e-01 73.2% 24.0%