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LC597490.1__BCO16250.1__X__00197

Bact-Vir

LC597490.1__BCO16250.1__X__00197

Identity

Accession:
LC597490 ↗
Kingdom:
phage

Quality

67.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bacillus_phage_vB_BceM_WH1

TaxID: 2795294

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 76-136
PDB
D2 medium residues 1-73
PDB
Domain cluster: rep: JQ768459.1__AFH14878.1__Lu11_0340__00347__D12-65
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3tu3B01 3.30.720.80 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.71 43.0 4.25e-01 83.6% 57.9%
1x0tA02 6.20.50.20 Special › Other non-globular › N-terminal domain of TfIIb › 0.62 38.0 4.57e-01 76.7% 100.0%
6phxA01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.59 52.0 3.45e-01 100.0% 51.0%
2dk7A00 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.58 35.0 3.51e-01 84.9% 57.5%
2m7oA00 3.10.450.400 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Uncharacterised protein PF15513, DUF4651 0.58 43.0 4.40e-01 95.9% 84.3%
4fw1A02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.57 36.0 4.03e-01 94.5% 85.2%
3b7fA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 51.0 3.25e-01 100.0% 27.2%
4g59B00 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.56 48.0 3.78e-01 98.6% 63.8%
2pvaA00 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.56 49.0 3.23e-01 100.0% 92.1%
5h1kB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 49.0 3.19e-01 100.0% 26.6%
4agiA00 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.55 47.0 3.18e-01 100.0% 29.6%
2oqcA00 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.55 48.0 3.19e-01 100.0% 92.4%
6vp6A03 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 47.0 3.11e-01 100.0% 26.4%
5h1kA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 46.0 2.98e-01 98.6% 40.0%
4cc9A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 43.0 2.86e-01 91.8% 91.5%
1ka1A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.52 45.0 3.22e-01 97.3% 87.2%
3t0qA00 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.52 43.0 2.86e-01 91.8% 58.9%
3vgzC00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 44.0 2.93e-01 100.0% 28.8%
1xipA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 42.0 2.73e-01 97.3% 27.2%
3iujA02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.50 43.0 2.88e-01 100.0% 25.8%
6fcvB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.50 43.0 2.78e-01 100.0% 32.9%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4243231 5.1.4.172 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_CAF1B_HIR1 0.63 57.0 3.30e-01 100.0% 15.4%
4330494 5.1.3.19 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira 0.63 57.0 3.84e-01 100.0% 36.5%
4025256 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.62 43.0 4.25e-01 86.3% 66.3%
3941042 5.1.4.62 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN 0.61 52.0 3.41e-01 100.0% 30.6%
3390746 5.1.3.19 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira 0.59 53.0 3.87e-01 97.3% 44.9%
3788029 5.1.3.19 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira 0.59 51.0 3.59e-01 97.3% 38.3%
3183049 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.59 53.0 3.32e-01 100.0% 21.4%
3404508 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.58 51.0 3.36e-01 100.0% 33.4%
3659736 5.1.3.19 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira 0.58 52.0 3.77e-01 100.0% 45.9%
3436651 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.57 49.0 3.20e-01 100.0% 29.0%
3596021 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 50.0 3.11e-01 100.0% 21.0%
3275111 5.1.4.304 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR11_2nd 0.56 49.0 3.21e-01 100.0% 42.6%
3812094 5.1.4.223 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RIC1_2nd 0.56 49.0 3.13e-01 100.0% 25.2%
3715518 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 47.0 3.06e-01 100.0% 28.0%
3485317 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.55 49.0 2.87e-01 100.0% 12.3%
3522461 4215.1.1.0 ↗ alpha arrays › SOCS box-like › SOCS box-like › SOCS box-like 0.55 48.0 3.05e-01 100.0% 32.3%
3392393 5.1.4.7 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1 0.55 49.0 3.08e-01 100.0% 24.1%
3639836 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.54 48.0 3.02e-01 100.0% 21.8%
3873021 5.1.5.4 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DPPIV_N 0.54 48.0 2.92e-01 100.0% 22.7%
3276702 5.1.4.319 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_WDR11_1st 0.54 45.0 2.82e-01 100.0% 27.5%
5023445 289.1.1.2 ↗ a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Zn_protease 0.54 42.0 3.49e-01 89.0% 80.7%
3424085 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.53 46.0 3.03e-01 100.0% 26.8%
3207575 5.1.4.6 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.53 46.0 3.09e-01 100.0% 26.6%
3781495 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.53 45.0 2.75e-01 100.0% 24.4%
3264116 5.1.5.76 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, Beta-prop_NOL10_N 0.53 45.0 2.97e-01 100.0% 30.6%
3270212 4291.1.1.1 ↗ beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.53 46.0 2.95e-01 97.3% 46.8%
3457412 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.51 44.0 3.05e-01 100.0% 34.1%
3516010 5.1.4.139 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_2 0.51 43.0 2.78e-01 100.0% 33.7%
3923813 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.50 35.0 3.65e-01 95.9% 83.1%