Back to structures

LC597490.1__BCO16257.1__X__00204

Bact-Vir

LC597490.1__BCO16257.1__X__00204

Identity

Accession:
LC597490 ↗
Kingdom:
phage

Quality

82.4 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-58
PDB
Domain cluster: representative
CATH (51)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4ye6A02 1.10.10.2420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.80 69.0 6.89e-01 94.6% 100.0%
2do7A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 71.0 6.27e-01 100.0% 70.0%
1s7zA01 1.20.120.780 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DNA mimic ocr 0.77 66.0 5.53e-01 100.0% 96.0%
3dplC03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 67.0 5.86e-01 100.0% 69.9%
3d5lA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 61.0 6.37e-01 91.1% 96.2%
3o2pE00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 66.0 5.73e-01 100.0% 80.2%
2khmA01 1.10.10.1350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain 0.73 63.0 5.15e-01 100.0% 60.2%
3e3vA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 62.0 6.24e-01 98.2% 96.4%
4usaA02 1.10.150.120 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › [2Fe-2S]-binding domain 0.72 61.0 4.89e-01 100.0% 47.9%
4a0zA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 60.0 5.92e-01 100.0% 88.1%
2klqA00 1.20.58.870 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.70 59.0 4.79e-01 100.0% 86.0%
2om6A02 1.10.150.400 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.70 53.0 4.80e-01 83.9% 67.1%
3eyyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.69 57.0 5.09e-01 94.6% 80.5%
2af7D00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.68 57.0 4.46e-01 98.2% 43.8%
3dptB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 58.0 5.51e-01 100.0% 100.0%
2c42A03 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.68 58.0 3.96e-01 100.0% 27.8%
3iuoA00 1.10.10.1390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › ATP-dependent DNA helicase RecQ 0.66 50.0 4.18e-01 98.2% 45.0%
2p1aB01 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.66 46.0 3.37e-01 73.2% 61.6%
3m4uB00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.65 54.0 3.54e-01 100.0% 58.3%
3ol4A02 1.10.10.2390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.65 53.0 5.26e-01 96.4% 95.0%
2nt2A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.65 55.0 4.18e-01 100.0% 60.6%
1r4gA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.64 41.0 4.19e-01 75.0% 67.9%
6tmfT00 1.10.60.20 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 0.64 52.0 5.08e-01 100.0% 87.5%
6n2nA01 3.40.920.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III 0.64 53.0 3.82e-01 100.0% 30.9%
5dikA00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.63 51.0 4.23e-01 100.0% 48.2%
2bkkC02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.63 50.0 3.66e-01 91.1% 80.3%
1v63A00 1.10.30.10 Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain 0.63 44.0 3.63e-01 73.2% 59.4%
2ouwB00 1.20.1290.10 Mainly Alpha › Up-down Bundle › AhpD-like › AhpD-like 0.63 50.0 3.88e-01 100.0% 37.5%
1lucB00 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.62 50.0 3.11e-01 89.3% 26.9%
3nuwA02 3.30.420.310 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 2-keto-3-deoxy-galactonokinase, C-terminal domain 0.62 51.0 3.51e-01 96.4% 25.4%
2xzmV01 1.10.60.20 Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › Ribosomal protein S17 0.61 50.0 4.92e-01 100.0% 91.8%
1gcvA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.61 51.0 3.93e-01 100.0% 91.4%
1zq3P00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.60 47.0 4.46e-01 94.6% 73.5%
1t0fA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 49.0 4.24e-01 100.0% 71.7%
2pbiA02 1.10.1240.60 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.59 48.0 4.01e-01 100.0% 51.5%
7qihA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.58 44.0 3.70e-01 96.4% 46.5%
4nqwB00 1.10.10.1320 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Anti-sigma factor, zinc-finger domain 0.58 45.0 4.18e-01 100.0% 67.1%
3l9tA01 1.10.1240.70 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.58 46.0 4.10e-01 94.6% 60.2%
3h5qA01 1.20.970.10 Mainly Alpha › Up-down Bundle › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain A, domain 3 › Transferase, Pyrimidine Nucleoside Phosphorylase; Chain C 0.58 48.0 4.51e-01 96.4% 74.3%
2l6jA00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.57 47.0 3.87e-01 96.4% 80.2%
2gytA01 1.10.287.2070 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.57 44.0 4.21e-01 100.0% 71.8%
2mgqA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.56 45.0 4.33e-01 100.0% 80.9%
2b0cA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.56 45.0 4.34e-01 91.1% 77.3%
2oxlA00 1.20.5.5260 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.54 48.0 4.66e-01 100.0% 90.3%
3u8vA00 1.20.120.660 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › IL-4 antagonist (De novo design) like domain 0.54 46.0 4.02e-01 92.9% 91.6%
5jazA03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.54 46.0 3.97e-01 100.0% 79.1%
1i36A02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.54 42.0 3.69e-01 98.2% 97.0%
2ra1A03 1.20.58.770 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 45.0 4.33e-01 98.2% 88.9%
4eekA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.52 42.0 4.02e-01 100.0% 78.8%
2zxqA06 1.20.1270.70 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle 0.51 38.0 3.67e-01 82.1% 78.8%
2e8gA01 1.20.1440.150 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.50 41.0 3.35e-01 100.0% 75.8%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4932241 2007.1.2.56 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › DUF116 0.87 76.0 5.18e-01 96.4% 29.4%
4932388 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.86 79.0 7.07e-01 100.0% 77.3%
3740124 101.1.17.19 alpha arrays › HTH › HTH › FF domain › DEK_C 0.82 69.0 7.03e-01 94.6% 100.0%
3909922 101.1.1.12 alpha arrays › HTH › HTH › Three-helical HTH › HTH_Tnp_Tc3_2 0.79 66.0 6.99e-01 94.6% 100.0%
3726085 101.1.2.127 alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.78 71.0 6.10e-01 100.0% 74.1%
4934674 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 68.0 4.99e-01 100.0% 36.7%
4995680 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.78 70.0 6.84e-01 100.0% 96.7%
5076317 195.1.1.1 alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.77 66.0 5.07e-01 98.2% 43.8%
4126690 101.35.1.4 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.77 65.0 6.57e-01 94.6% 94.5%
4940329 2007.1.2.56 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › DUF116 0.77 67.0 4.65e-01 98.2% 30.1%
3935995 101.1.2.127 alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.77 68.0 6.20e-01 100.0% 77.3%
3715856 101.1.2.166 alpha arrays › HTH › HTH › winged helix domain › MCM6_C 0.77 67.0 5.77e-01 100.0% 90.0%
3597746 101.1.2.127 alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.76 67.0 5.99e-01 100.0% 86.3%
3178452 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 62.0 5.94e-01 98.2% 78.5%
4932863 101.1.2.947 alpha arrays › HTH › HTH › winged helix domain › PF27234 0.75 66.0 5.91e-01 100.0% 71.2%
3505632 101.1.2.127 alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.75 66.0 5.90e-01 100.0% 77.5%
3303808 605.8.1.4 alpha duplicates or obligate multimers › ROP-like › BAS1536-like › BAS1536-like › Ovate 0.74 63.0 6.43e-01 96.4% 98.2%
3333032 101.7.1.1 alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.74 63.0 6.29e-01 98.2% 98.3%
5079733 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.74 62.0 5.60e-01 94.6% 68.0%
4571183 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.73 64.0 5.16e-01 96.4% 92.4%
3255248 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.73 61.0 5.79e-01 100.0% 85.7%
4978899 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.72 63.0 5.64e-01 100.0% 91.3%
4362811 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.72 63.0 6.42e-01 100.0% 100.0%
3640877 101.1.2.627 alpha arrays › HTH › HTH › winged helix domain › Ovate 0.69 58.0 5.89e-01 98.2% 100.0%
3741782 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.69 62.0 4.85e-01 100.0% 49.6%
5045223 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.69 60.0 5.19e-01 100.0% 63.3%
3877844 529.1.1.2 few secondary structure elements › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › BSMAP 0.68 60.0 5.13e-01 100.0% 71.1%
4456963 563.1.1.1 alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP 0.68 57.0 3.98e-01 94.6% 42.2%
3455407 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.68 58.0 5.90e-01 100.0% 100.0%
3467989 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.68 57.0 5.63e-01 100.0% 90.0%
3227144 3277.2.1.1 alpha arrays › Thymine dioxygenase JBP1 DNA-binding domain-like › a C-terminal domain in chromodomain helicase DNA-binding protein 1 › a C-terminal domain in chromodomain helicase DNA-binding protein 1 › CHD1-like_C 0.68 55.0 4.64e-01 96.4% 71.4%
5060140 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.65 40.0 3.81e-01 83.9% 53.8%
3687407 101.11.1.0 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 0.64 53.0 5.05e-01 100.0% 98.6%
3464617 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 54.0 5.37e-01 100.0% 93.3%
3251233 2004.5.1.8 a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain › C9orf72-like 0.63 55.0 3.62e-01 98.2% 23.5%
3366917 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.63 52.0 5.31e-01 100.0% 100.0%
3491886 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.63 43.0 3.97e-01 73.2% 82.7%
3815745 592.6.1.1 alpha arrays › PWI domain-like › Pre-mRNA-splicing helicase BRR2 plug domain › Pre-mRNA-splicing helicase BRR2 plug domain › BRR2_plug 0.62 53.0 4.79e-01 100.0% 81.2%
4591229 190.1.1.8 alpha arrays › HMG-box-like › HMG-box › HMG-box › NUT 0.62 50.0 4.20e-01 89.3% 84.2%
5067099 101.1.10.3 alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.61 51.0 4.00e-01 98.2% 46.7%
5014266 632.11.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › AF1782-like › AF1782-like 0.61 43.0 3.87e-01 73.2% 56.0%
1721534 592.1.1.2 alpha arrays › PWI domain-like › PWI domain › PWI domain › Helicase_PWI 0.61 51.0 4.13e-01 100.0% 72.3%
None 0.59 54.0 4.45e-01 100.0% 77.3%
3588719 564.1.1.0 alpha arrays › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors › N-terminal, cytoplasmic domain of anti-sigma factors 0.59 49.0 4.76e-01 100.0% 87.7%
3201364 190.1.1.1 alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.59 40.0 3.74e-01 73.2% 76.0%
None 0.58 50.0 3.34e-01 96.4% 71.6%
3940186 226.1.1.0 a+b two layers › POZ domain › POZ domain › POZ domain 0.56 49.0 4.36e-01 100.0% 68.8%
3636116 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.55 45.0 2.90e-01 100.0% 18.8%
3996651 109.4.1.1843 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_IFT80_172, TPR_WDR35 0.53 42.0 2.67e-01 91.1% 14.9%
3688281 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.53 40.0 3.32e-01 80.4% 68.4%