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LC597490.1__BCO16268.1__X__00215

Bact-Vir

LC597490.1__BCO16268.1__X__00215

Identity

Accession:
LC597490 ↗
Kingdom:
phage

Quality

66.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bacillus_phage_vB_BceM_WH1

TaxID: 2795294

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-81
PDB
Domain cluster: rep: MT740734.1__QMV32893.1__2CaD_00003__00003__D60-125
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3lbfA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.70 54.0 3.92e-01 81.0% 87.4%
6mzoA01 3.40.50.11970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.66 46.0 3.97e-01 73.4% 84.9%
1vbfA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.66 48.0 3.52e-01 78.5% 83.9%
2w00A01 3.90.1570.50 Alpha Beta › Alpha-Beta Complex › tt1808, chain A › 0.63 46.0 3.60e-01 77.2% 57.3%
2xdoD00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.62 45.0 2.90e-01 75.9% 52.7%
1u14A00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.60 46.0 3.60e-01 82.3% 92.9%
1iruI00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.57 40.0 2.99e-01 74.7% 74.1%
1yr2A02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.54 40.0 2.70e-01 78.5% 71.9%
2wesA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 41.0 2.54e-01 82.3% 52.2%
3e1tA02 3.30.9.100 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › 0.53 42.0 3.32e-01 86.1% 85.5%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.52 38.0 3.15e-01 79.7% 83.8%
4dunA01 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.51 41.0 3.55e-01 88.6% 67.7%
1sxjH02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.50 36.0 3.11e-01 75.9% 90.6%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5012791 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.66 46.0 3.72e-01 72.2% 67.3%
3601760 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.65 48.0 4.20e-01 78.5% 81.7%
3685990 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.63 45.0 3.50e-01 75.9% 81.7%
3696165 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.59 43.0 3.72e-01 77.2% 96.8%
5067762 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.59 41.0 3.22e-01 72.2% 45.6%
5079606 286.1.1.1 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.57 44.0 3.53e-01 84.8% 79.3%
4046575 286.1.1.2 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.56 42.0 3.74e-01 79.7% 80.9%
3509004 210.1.2.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Peptidase_C69 0.56 39.0 2.69e-01 72.2% 30.8%
5052087 2004.1.1.162 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 0.55 42.0 3.02e-01 82.3% 65.3%
3716012 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 42.0 2.71e-01 82.3% 52.3%
5008378 296.1.1.1 ↗ a+b three layers › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › Sulfite reductase hemoprotein (SiRHP), domains 2 and 4 › NIR_SIR 0.55 44.0 3.63e-01 91.1% 80.0%
3967702 286.1.1.2 ↗ a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.54 40.0 3.47e-01 78.5% 79.2%
4013529 7579.1.1.0 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.53 44.0 3.08e-01 93.7% 79.5%
3457419 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.53 38.0 3.50e-01 75.9% 90.5%
4985409 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.52 39.0 3.10e-01 78.5% 69.0%
4959855 7515.1.1.8 ↗ a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Metalloenzyme 0.52 37.0 2.55e-01 77.2% 62.5%
5794 295.1.1.7 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › MRP 0.52 38.0 3.15e-01 79.7% 83.8%
3645253 5.1.3.65 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.51 45.0 3.08e-01 98.7% 68.6%
3990149 9.1.1.12 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › THAP4_heme-bd 0.51 41.0 3.81e-01 88.6% 83.5%
3629277 5.1.5.89 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PF31099 0.51 40.0 2.57e-01 87.3% 52.6%
3760926 227.1.1.12 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.50 36.0 3.03e-01 75.9% 86.3%
2909907 7515.1.1.5 ↗ a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase,SGSH_C 0.50 35.0 2.33e-01 75.9% 42.9%
D2 high residues 88-244_275-293
PDB
Domain cluster: rep: rifcsphigho2_12_scaffold_16_prodigal-single.1__X__X__00370__D51-199
D3 medium residues 392-460
PDB