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LC597490.1__BCO16303.1__X__00250
Bact-VirLC597490.1__BCO16303.1__X__00250
Identity
- Accession:
- LC597490 ↗
- Kingdom:
- phage
Quality
87.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-47
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00395.26 best | SLH | 25.9 | 1.10e-05 | 81.0% | 72.7% |
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3cqcA00 | 1.20.190.50 | Mainly Alpha › Up-down Bundle › Delta-Endotoxin; domain 1 › | 0.66 | 44.0 | 2.73e-01 | 97.6% | 11.7% |
| 2bskB00 | 1.10.287.810 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains | 0.66 | 52.0 | 4.44e-01 | 88.1% | 55.4% |
| 6lo8F01 | 1.10.287.810 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Mitochondrial import inner membrane translocase subunit tim13 like domains | 0.62 | 50.0 | 4.20e-01 | 88.1% | 53.6% |
| 3eeeA00 | 3.90.1520.10 | Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain | 0.62 | 54.0 | 3.51e-01 | 100.0% | 27.1% |
| 2f48A01 | 3.40.50.450 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.61 | 53.0 | 3.23e-01 | 100.0% | 34.4% |
| 3okqA00 | 1.20.58.1540 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Actin interacting protein 3, C-terminal domain | 0.58 | 42.0 | 3.08e-01 | 81.0% | 28.8% |
| 2kivA01 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.53 | 40.0 | 3.59e-01 | 85.7% | 95.2% |
| 1u9lB00 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.53 | 40.0 | 3.65e-01 | 100.0% | 92.9% |
| 7tchB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 44.0 | 2.82e-01 | 100.0% | 24.4% |
| 8gthB01 | 1.10.760.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome Bc1 Complex; Chain D, domain 2 › Cytochrome c-like domain | 0.52 | 38.0 | 3.12e-01 | 88.1% | 85.6% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3457023 | 109.4.1.23 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › B56 | 0.61 | 45.0 | 2.56e-01 | 78.6% | 8.2% |
| 5052020 | 1085.1.1.1 ↗ | few secondary structure elements › Archaea X-group 1085 › Archaea H-group 1085.1 › Archaea T-group 1085.1.1 › DHH_CID | 0.59 | 50.0 | 4.00e-01 | 100.0% | 65.6% |
| 4951056 | 1085.1.1.1 ↗ | few secondary structure elements › Archaea X-group 1085 › Archaea H-group 1085.1 › Archaea T-group 1085.1.1 › DHH_CID | 0.59 | 50.0 | 4.07e-01 | 100.0% | 74.1% |
| 3303197 | 904.1.1.0 ↗ | few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain | 0.58 | 45.0 | 3.49e-01 | 85.7% | 38.9% |
| 3447438 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.57 | 47.0 | 3.63e-01 | 100.0% | 82.7% |
| 3759004 | 622.1.1.22 ↗ | alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › TF_AP-2 | 0.57 | 41.0 | 2.96e-01 | 78.6% | 54.4% |
| 4446401 | 7015.1.1.0 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain | 0.56 | 44.0 | 3.25e-01 | 100.0% | 53.8% |
| 4980754 | 633.23.1.0 ↗ | alpha bundles › Bromodomain-like › Claudin › Claudin | 0.53 | 46.0 | 3.09e-01 | 100.0% | 57.0% |
| 3944683 | 4168.1.1.1 ↗ | alpha duplicates or obligate multimers › HAMP domain › HAMP domain › HAMP domain › HAMP | 0.51 | 39.0 | 3.56e-01 | 90.5% | 63.6% |