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LC597490.1__BCO16343.1__X__00290

Bact-Vir

LC597490.1__BCO16343.1__X__00290

Identity

Accession:
LC597490 ↗
Kingdom:
phage

Quality

82.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bacillus_phage_vB_BceM_WH1

TaxID: 2795294

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-56
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
8eb0A01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.67 44.0 3.72e-01 92.5% 41.9%
4cgyA04 1.10.290.10 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 4 › Topoisomerase I, domain 4 0.66 46.0 3.52e-01 73.6% 95.2%
5d0iB00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.61 36.0 3.66e-01 92.5% 54.9%
2rijA02 3.30.60.70 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Trimeric LpxA-like enzymes 0.61 35.0 3.84e-01 73.6% 70.7%
4yy8B01 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.61 50.0 4.57e-01 100.0% 79.5%
1wh2A01 3.30.1490.40 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › GYF domain 0.58 37.0 3.56e-01 75.5% 55.7%
5i41B00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.57 47.0 4.48e-01 98.1% 76.1%
3blzA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 39.0 3.06e-01 77.4% 67.7%
2lvhA00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.55 40.0 4.26e-01 83.0% 86.7%
2byvE05 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 30.0 2.73e-01 86.8% 34.2%
3gpvA00 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.53 44.0 3.58e-01 100.0% 46.9%
3ce2A02 1.10.287.830 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › putative peptidase helix hairpin domain like 0.52 31.0 3.33e-01 83.0% 68.1%
8fkmA01 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.51 38.0 2.80e-01 86.8% 77.4%
1qusA01 1.10.8.350 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Bacterial muramidase 0.50 40.0 3.33e-01 100.0% 79.6%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3593477 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 46.0 3.37e-01 79.2% 52.6%
4312875 103.2.1.0 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone 0.57 44.0 3.71e-01 86.8% 92.6%
3216198 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.57 40.0 3.43e-01 73.6% 78.9%
5025086 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.57 42.0 4.18e-01 94.3% 78.2%
4989754 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.56 38.0 3.46e-01 73.6% 72.5%
3804735 822.1.1.3 ↗ a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_ATXR3 0.56 35.0 3.44e-01 75.5% 57.6%
4954173 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.56 38.0 3.46e-01 71.7% 73.3%
4952141 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.55 38.0 3.40e-01 73.6% 71.2%
3514894 386.1.1.337 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › CCDC174_GRSR 0.55 31.0 3.56e-01 88.7% 86.7%
3784313 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.55 39.0 3.39e-01 79.2% 96.7%
3486229 103.2.1.0 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone 0.54 39.0 3.43e-01 81.1% 100.0%
4956905 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.54 37.0 3.33e-01 73.6% 72.5%
3886999 386.1.1.20 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met 0.53 38.0 4.19e-01 83.0% 100.0%
4994194 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.53 36.0 3.34e-01 73.6% 74.7%
4948813 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.53 36.0 3.26e-01 73.6% 70.0%
4952067 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.53 38.0 3.64e-01 81.1% 83.1%
5051773 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.52 37.0 3.27e-01 79.2% 95.6%
3594048 103.2.1.0 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone 0.52 39.0 3.38e-01 84.9% 97.8%
5057106 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.52 39.0 3.39e-01 86.8% 98.9%
2791177 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.51 37.0 3.09e-01 81.1% 83.0%
3283003 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.51 38.0 3.30e-01 88.7% 75.5%
3737561 386.1.1.116 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › ANM3_C2H2_Zf 0.51 38.0 3.31e-01 98.1% 51.1%
3484301 102.1.1.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like 0.50 35.0 2.56e-01 75.5% 28.1%
4988977 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.50 36.0 3.89e-01 90.6% 95.3%
4681348 103.2.1.2 ↗ alpha arrays › RuvA-C › ATP cone › ATP cone › ATP-cone 0.50 37.0 3.15e-01 84.9% 94.0%