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LC625742.1__BCU41188.1__X__00013

Bact-Vir

LC625742.1__BCU41188.1__X__00013

Identity

Accession:
LC625742 ↗
Kingdom:
phage

Quality

84.3 mean pLDDT

Taxonomy

Bacteriophage_sp.

TaxID: 38018

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-57
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3lrqB00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.56 39.0 3.50e-01 74.5% 62.5%
7zj3D01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.54 38.0 3.38e-01 74.5% 60.5%
3ndhA00 3.40.600.30 Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › 0.54 46.0 3.18e-01 100.0% 54.7%
5feyA00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.52 37.0 3.37e-01 74.5% 62.8%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5060499 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.65 44.0 4.41e-01 70.9% 74.5%
3896422 216.1.1.25 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › PF31022 0.58 48.0 3.35e-01 94.5% 45.3%
3525877 4099.1.1.51 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › PF31022 0.58 48.0 3.49e-01 94.5% 42.5%
4326544 192.10.1.0 ↗ alpha bundles › Long alpha-hairpin › DnaK suppressor protein DksA, alpha-hairpin domain › DnaK suppressor protein DksA, alpha-hairpin domain 0.58 37.0 2.94e-01 70.9% 28.8%
3625563 386.1.1.0 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.56 43.0 3.93e-01 94.5% 62.7%
3243104 376.1.1.22 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_3 0.55 38.0 3.73e-01 72.7% 83.3%
145276 377.1.1.10 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › ArfGap 0.51 44.0 3.35e-01 100.0% 46.8%
3990128 2003.1.5.62 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Eco57I 0.51 44.0 2.69e-01 100.0% 28.5%
3597386 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.50 36.0 3.01e-01 78.2% 44.8%