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LC625742.1__BCU41204.1__X__00029

Bact-Vir

LC625742.1__BCU41204.1__X__00029

Identity

Accession:
LC625742 ↗
Kingdom:
phage

Quality

94.7 mean pLDDT

Taxonomy

TaxID: 38018

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-77
PDB
Domain cluster: representative
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5fgoA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.71 52.0 5.59e-01 90.8% 95.2%
4bboA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.67 49.0 4.32e-01 77.6% 61.9%
3zhaQ02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.66 48.0 3.98e-01 76.3% 68.7%
1yqfB00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.66 55.0 4.15e-01 96.1% 39.0%
5ncsA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.65 46.0 3.74e-01 73.7% 98.6%
4qrlA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.64 44.0 3.88e-01 71.1% 60.9%
3ndaA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.63 47.0 3.93e-01 80.3% 76.5%
5c0pA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.62 55.0 3.74e-01 100.0% 73.9%
4zk3A02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.62 46.0 3.90e-01 78.9% 71.7%
3jv1A00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.62 52.0 3.97e-01 94.7% 42.3%
3kxyJ00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.61 50.0 4.25e-01 90.8% 72.9%
1attA01 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.61 48.0 3.95e-01 85.5% 98.6%
4l9cA00 3.40.1000.30 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › 0.61 50.0 4.05e-01 92.1% 62.0%
4ge1C00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 51.0 3.76e-01 92.1% 85.5%
4g6tA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.60 49.0 4.18e-01 90.8% 71.9%
4e9kA00 2.60.120.1350 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF4465 0.60 44.0 3.12e-01 77.6% 46.7%
3dmbA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.60 41.0 3.32e-01 71.1% 78.8%
7bysA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.60 51.0 3.52e-01 100.0% 67.9%
1ospO01 2.40.128.160 Mainly Beta › Beta Barrel › Lipocalin › C1 set domains (antibody constant domain-like) 0.60 44.0 3.98e-01 81.6% 57.1%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.59 46.0 3.83e-01 85.5% 66.9%
1l3aA00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.59 51.0 4.03e-01 100.0% 51.2%
8fkmA01 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.59 47.0 3.77e-01 90.8% 87.2%
4hbrA00 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 50.0 4.14e-01 96.1% 57.9%
1lj5A02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.58 43.0 3.46e-01 78.9% 71.4%
6nu7A01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.58 50.0 3.36e-01 100.0% 86.3%
3q5zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.58 40.0 3.53e-01 73.7% 91.7%
1tu1A00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.58 44.0 3.68e-01 85.5% 48.6%
4r03A00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.57 46.0 4.16e-01 92.1% 85.3%
4xmeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.56 48.0 3.67e-01 96.1% 89.1%
2x9oA00 3.40.1500.20 Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › 0.55 46.0 3.36e-01 96.1% 68.2%
1v2bB00 3.40.1000.10 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich 0.55 43.0 3.52e-01 88.2% 54.3%
1ylxA00 3.30.70.1480 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like 0.55 47.0 4.31e-01 94.7% 72.7%
2leqA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 45.0 3.74e-01 97.4% 70.5%
1aqbA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 44.0 3.52e-01 97.4% 72.0%
1av4A03 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.54 42.0 2.73e-01 90.8% 86.3%
3eliA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 45.0 3.75e-01 97.4% 70.1%
4htgA03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.53 40.0 4.03e-01 84.2% 82.3%
3apuB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.52 41.0 3.32e-01 92.1% 58.7%
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.51 42.0 3.71e-01 97.4% 71.2%
1fx5B00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 43.0 3.09e-01 96.1% 88.3%
3dpuB03 3.30.310.200 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.51 38.0 3.43e-01 89.5% 56.5%
2psbA00 3.50.90.10 Alpha Beta › 3-Layer(bba) Sandwich › YerB-like fold › YerB-like 0.50 40.0 2.78e-01 89.5% 34.5%
2gc9B00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 43.0 3.46e-01 100.0% 63.4%
3thxA02 3.30.420.110 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › MutS, connector domain 0.50 38.0 3.04e-01 82.9% 70.3%
2o62A01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 42.0 3.60e-01 96.1% 62.6%
3p0lD00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.50 41.0 3.19e-01 93.4% 51.9%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2103558 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.74 48.0 3.90e-01 84.2% 36.2%
5003966 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.72 58.0 6.18e-01 94.7% 100.0%
4954762 241.1.1.0 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.69 56.0 4.80e-01 90.8% 73.6%
154136 4059.1.1.0 a+b complex topology › Serpins › Serpins › Serpins 0.66 49.0 3.10e-01 78.9% 45.2%
4458125 4059.1.1.1 a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.66 47.0 3.04e-01 76.3% 51.1%
3700623 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.65 54.0 4.07e-01 92.1% 83.2%
3649973 5.1.4.21 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Pep3_Vps18 0.63 55.0 3.51e-01 98.7% 50.5%
3812918 331.3.1.43 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › PDF2_C 0.62 50.0 3.63e-01 89.5% 70.9%
4032161 809.1.1.0 a+b two layers › BLIP-like › beta-lactamase-inhibitor protein, BLIP › beta-lactamase-inhibitor protein, BLIP 0.62 39.0 4.13e-01 71.1% 75.0%
3226497 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.61 49.0 4.29e-01 97.4% 58.3%
4978599 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.61 53.0 3.44e-01 100.0% 50.7%
3513884 2007.1.2.0 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.61 45.0 3.37e-01 78.9% 48.9%
3438347 5.1.5.63 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › DUF1618 0.61 49.0 4.09e-01 90.8% 95.0%
3799100 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.60 52.0 3.44e-01 100.0% 80.0%
3577955 2003.1.5.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.60 50.0 3.44e-01 92.1% 61.1%
3283514 2003.1.5.151 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23, Methyltransf_25 0.60 45.0 3.12e-01 78.9% 36.9%
5045854 243.5.1.0 a+b two layers › Cystatin-like › Amine oxidase N-terminal region › Amine oxidase N-terminal region 0.60 42.0 4.16e-01 73.7% 86.3%
3431417 9.2.1.4 beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › DUF2921_N 0.60 45.0 3.77e-01 82.9% 56.4%
3643787 5.1.3.142 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.60 51.0 3.39e-01 100.0% 50.7%
3911919 4059.1.1.1 a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.59 43.0 2.81e-01 78.9% 44.0%
3577440 719.1.1.0 beta barrels › XRCC4, N-terminal domain-like › XRCC4, N-terminal domain › XRCC4, N-terminal domain 0.59 47.0 4.19e-01 89.5% 90.4%
3177145 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.59 42.0 3.87e-01 75.0% 63.0%
3499345 4325.1.1.0 mixed a+b and a/b › YegP-like › YegP-like › YegP-like 0.59 40.0 3.87e-01 92.1% 62.4%
3645309 4099.1.1.27 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › DUF7806 0.59 54.0 5.02e-01 100.0% 81.9%
3732505 241.15.1.3 a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › SPC25 0.59 47.0 4.16e-01 92.1% 62.5%
1489344 330.10.1.1 a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain › YcaO 0.59 44.0 3.78e-01 84.2% 80.7%
3263602 4291.1.1.1 beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol_BP 0.58 42.0 2.77e-01 77.6% 22.1%
3487292 5.1.4.34 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup88 0.58 46.0 2.85e-01 90.8% 27.9%
4978501 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.57 50.0 4.06e-01 100.0% 76.5%
3938374 12.1.1.23 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › hGDE_central 0.57 39.0 3.55e-01 71.1% 99.0%
3944588 241.1.1.9 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › DUF3156 0.57 48.0 3.78e-01 96.1% 81.8%
3924310 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 48.0 3.17e-01 98.7% 44.3%
3931299 4099.1.1.20 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Med14_RM6 0.57 48.0 4.00e-01 96.1% 65.0%
3214276 4059.1.1.1 a+b complex topology › Serpins › Serpins › Serpins › Serpin 0.57 42.0 2.94e-01 80.3% 49.6%
3721408 5.1.3.40 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Arylsulfotran_2 0.57 49.0 3.15e-01 100.0% 59.8%
3936442 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 45.0 4.11e-01 86.8% 75.0%
4976692 844.1.1.0 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.56 48.0 3.44e-01 100.0% 55.1%
3196796 220.1.1.36 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.55 43.0 3.10e-01 86.8% 59.6%
3497302 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.55 49.0 3.97e-01 97.4% 96.4%
3291499 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.55 46.0 3.80e-01 97.4% 70.0%
3962091 512.1.1.0 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.54 38.0 3.79e-01 75.0% 86.3%
5007185 71.1.1.0 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.54 47.0 3.82e-01 98.7% 63.4%
3378755 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.53 44.0 3.84e-01 96.1% 73.6%
4027047 241.6.1.0 a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits 0.52 44.0 3.69e-01 96.1% 95.0%
4030584 206.1.1.10 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Choline_kinase 0.52 45.0 2.92e-01 97.4% 28.9%
3956123 331.3.1.9 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.52 43.0 3.66e-01 97.4% 73.6%
3384789 304.8.1.45 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.52 41.0 3.68e-01 86.8% 94.5%
3550677 9.1.1.1 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Lipocalin 0.52 41.0 3.24e-01 90.8% 86.7%
4643894 9.1.1.8 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › PA_decarbox 0.51 44.0 3.55e-01 100.0% 61.3%
3265830 241.6.1.1 a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits › P34-Arc 0.51 42.0 3.72e-01 92.1% 85.2%
3357481 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.51 43.0 2.65e-01 98.7% 37.5%
4967370 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.51 37.0 3.60e-01 81.6% 68.9%
4827588 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.50 40.0 3.21e-01 90.8% 45.5%
5009292 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.50 39.0 2.84e-01 88.2% 35.8%