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LC625742.1__BCU41214.1__X__00039

Bact-Vir

LC625742.1__BCU41214.1__X__00039

Identity

Accession:
LC625742 ↗
Kingdom:
phage

Quality

84.7 mean pLDDT

Taxonomy

Bacteriophage_sp.

TaxID: 38018

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 45-193
PDB
Domain cluster: rep: IMGVR_UViG_2639762563_000001-2639762563-2640012022__D33-166
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3fovA00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.62 36.0 4.28e-01 76.5% 83.3%
6ll8A02 3.10.310.20 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › DHHA2 domain 0.57 41.0 4.52e-01 95.3% 92.5%
3r1kA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 36.0 3.85e-01 98.0% 72.9%
1m6eX02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 33.0 2.96e-01 94.6% 39.7%
1dmuA00 3.40.600.20 Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › Restriction endonuclease BglI 0.56 44.0 3.54e-01 83.9% 63.2%
1i74A02 3.10.310.20 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › DHHA2 domain 0.55 40.0 4.47e-01 94.6% 95.0%
1tx3D00 3.40.600.10 Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › DNA mismatch repair MutH/Restriction endonuclease, type II 0.54 38.0 3.28e-01 72.5% 64.8%
3gkbA00 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.53 46.0 3.77e-01 93.3% 73.7%
2kknA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.52 31.0 3.08e-01 94.0% 54.8%
2qb7B02 3.10.310.20 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › DHHA2 domain 0.52 43.0 4.45e-01 94.6% 93.6%
6m37B01 3.30.750.24 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain 0.51 34.0 3.89e-01 86.6% 100.0%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1164097 3535.1.1.1 ↗ a+b two layers › Sex pheromone staph-cAM373 › Sex pheromone staph-cAM373 › Sex pheromone staph-cAM373 › CamS 0.65 50.0 4.86e-01 98.7% 71.7%
4950447 2008.1.1.87 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › YhcG_C 0.63 42.0 4.16e-01 96.6% 64.3%
4031223 2008.1.1.204 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF2800 0.62 44.0 3.66e-01 72.5% 47.2%
4223379 2008.1.1.6 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 0.60 37.0 4.18e-01 78.5% 80.0%
4304580 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.58 42.0 3.53e-01 73.2% 60.4%
4043610 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.58 41.0 3.46e-01 73.2% 55.2%
3462526 2492.1.1.11 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › NPL4 0.57 49.0 4.38e-01 91.9% 83.8%
3272934 2003.1.5.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › FtsJ 0.57 40.0 3.18e-01 72.5% 54.9%
None — 0.57 41.0 3.37e-01 73.2% 56.6%
4141864 2008.1.1.6 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › UPF0102 0.56 36.0 3.99e-01 77.9% 79.8%
4930787 315.1.1.0 ↗ a+b two layers › Tautomerase/MIF-like › Tautomerase/MIF › Tautomerase/MIF 0.56 40.0 4.48e-01 85.2% 100.0%
3620916 327.6.1.2 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Fe-S cluster assembly (FSCA) domain-like › Fe-S cluster assembly (FSCA) domain-like › FeS_assembly_P 0.56 40.0 4.22e-01 73.2% 90.8%
None — 0.55 40.0 3.87e-01 73.8% 90.3%
3944555 2008.1.1.103 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Transposase_31 0.55 38.0 3.89e-01 91.9% 70.7%
4432991 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.53 45.0 3.37e-01 90.6% 49.7%
4966648 1.1.9.0 ↗ beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.52 38.0 3.84e-01 74.5% 90.3%
3595189 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.52 34.0 3.65e-01 79.9% 76.2%
4029898 5104.1.1.0 ↗ a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.51 43.0 4.39e-01 94.0% 92.4%
4027959 2492.1.1.11 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › NPL4 0.51 44.0 3.67e-01 91.9% 71.0%
5035680 2008.1.1.0 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like 0.51 38.0 3.63e-01 92.6% 64.6%
3727975 5104.1.1.3 ↗ a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA2 0.51 45.0 4.22e-01 94.6% 97.8%
4672117 5104.1.1.1 ↗ a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 0.50 39.0 4.27e-01 94.6% 98.4%