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LC625742.1__BCU41216.1__X__00041
Bact-VirLC625742.1__BCU41216.1__X__00041
Identity
- Accession:
- LC625742 ↗
- Kingdom:
- phage
Quality
93.3
mean pLDDT
Cluster
View cluster (3 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-84
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF19385.5 best | DUF5960 | 36.1 | 9.70e-09 | 93.5% | 71.1% |
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1jm1A00 | 2.102.10.10 | Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain | 0.58 | 47.0 | 3.52e-01 | 90.9% | 72.3% |
| 4bwiB01 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.57 | 48.0 | 3.65e-01 | 96.1% | 63.5% |
| 2ykfA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.56 | 46.0 | 3.82e-01 | 93.5% | 65.8% |
| 4gw9A01 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.55 | 46.0 | 3.38e-01 | 93.5% | 56.7% |
| 7rkbA01 | 3.90.420.10 | Alpha Beta › Alpha-Beta Complex › Sulfite Oxidase; Chain A, domain 2 › Oxidoreductase, molybdopterin-binding domain | 0.55 | 47.0 | 3.98e-01 | 97.4% | 96.2% |
| 4r80A00 | 3.10.450.630 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.55 | 40.0 | 4.10e-01 | 88.3% | 80.3% |
| 3lidA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.54 | 39.0 | 3.40e-01 | 80.5% | 65.7% |
| 1e8oA00 | 3.30.720.10 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Signal recognition particle alu RNA binding heterodimer, srp9/1 | 0.54 | 33.0 | 3.44e-01 | 98.7% | 64.9% |
| 4ghbA00 | 2.40.160.190 | Mainly Beta › Beta Barrel › Porin › | 0.53 | 46.0 | 3.25e-01 | 98.7% | 94.1% |
| 1f1uA01 | 3.10.180.10 | Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 | 0.53 | 35.0 | 2.92e-01 | 77.9% | 35.8% |
| 1oygA01 | 2.115.10.20 | Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 | 0.53 | 43.0 | 2.75e-01 | 93.5% | 94.5% |
| 2rs7A01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.52 | 43.0 | 4.44e-01 | 98.7% | 100.0% |
| 2hesX00 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.52 | 37.0 | 2.53e-01 | 93.5% | 18.8% |
| 2qkpD00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.52 | 41.0 | 3.60e-01 | 93.5% | 75.4% |
| 4mmnA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.51 | 43.0 | 3.66e-01 | 100.0% | 85.1% |
| 6ll8A02 | 3.10.310.20 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › DHHA2 domain | 0.51 | 37.0 | 3.31e-01 | 79.2% | 67.5% |
| 5llyA02 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.51 | 43.0 | 3.38e-01 | 100.0% | 84.9% |
| 4perB00 | 3.10.130.10 | Alpha Beta › Roll › P-30 Protein › Ribonuclease A-like domain | 0.51 | 43.0 | 3.91e-01 | 97.4% | 100.0% |
| 4dkkA02 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.51 | 40.0 | 4.14e-01 | 100.0% | 94.6% |
| 2zbbA02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.51 | 39.0 | 3.91e-01 | 87.0% | 96.3% |
| 3mmhA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.50 | 42.0 | 3.42e-01 | 100.0% | 72.5% |
| 4evsA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.50 | 42.0 | 3.42e-01 | 100.0% | 91.2% |
| 2dsrG00 | 4.10.800.10 | Few Secondary Structures › Irregular › Invariant Chain; Chain I › Thyroglobulin type-1 | 0.50 | 35.0 | 3.48e-01 | 77.9% | 70.9% |
ECOD (34)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4588886 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.60 | 49.0 | 4.34e-01 | 93.5% | 80.0% |
| 4997576 | 223.1.1.27 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_10 | 0.58 | 47.0 | 4.29e-01 | 93.5% | 82.7% |
| 4937737 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.57 | 47.0 | 4.58e-01 | 92.2% | 96.5% |
| 4466703 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.56 | 46.0 | 3.82e-01 | 93.5% | 60.7% |
| 4955040 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.56 | 36.0 | 3.56e-01 | 98.7% | 62.5% |
| 5047353 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.56 | 45.0 | 3.98e-01 | 94.8% | 87.2% |
| 5053325 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.55 | 46.0 | 4.18e-01 | 97.4% | 96.4% |
| 4108884 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.55 | 45.0 | 4.00e-01 | 93.5% | 80.8% |
| 5022607 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.55 | 47.0 | 3.32e-01 | 96.1% | 84.0% |
| 3377093 | 5.3.1.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II | 0.55 | 40.0 | 3.50e-01 | 83.1% | 48.8% |
| 4949861 | 223.1.1.23 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_2 | 0.55 | 46.0 | 3.72e-01 | 100.0% | 77.0% |
| 3280199 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.54 | 45.0 | 3.81e-01 | 100.0% | 72.4% |
| 4974348 | 223.1.1.23 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_2 | 0.54 | 44.0 | 3.51e-01 | 93.5% | 54.1% |
| 3909234 | 214.1.1.1 ↗ | a+b two layers › SH2 › SH2 › SH2 › SH2 | 0.54 | 38.0 | 3.47e-01 | 77.9% | 54.8% |
| 5067842 | 223.1.1.27 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_10 | 0.54 | 44.0 | 3.68e-01 | 93.5% | 64.3% |
| 3970166 | 330.10.1.0 ↗ | a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain | 0.53 | 42.0 | 3.90e-01 | 100.0% | 68.0% |
| 3964389 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.53 | 44.0 | 4.20e-01 | 97.4% | 90.5% |
| 5082716 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.53 | 43.0 | 4.03e-01 | 94.8% | 99.0% |
| 4629016 | 60.1.2.1 ↗ | beta barrels › SPOC domain-like › SPOC domain-related › Ku70/80 subunit middle domain › Ku | 0.53 | 42.0 | 2.87e-01 | 89.6% | 63.4% |
| 3929759 | 2007.1.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like | 0.53 | 45.0 | 3.40e-01 | 100.0% | 45.7% |
| 4320398 | 211.1.1.18 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Diox-like_N | 0.53 | 35.0 | 3.08e-01 | 77.9% | 44.2% |
| 5686 | 211.1.1.18 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Diox-like_N | 0.52 | 35.0 | 3.44e-01 | 76.6% | 63.1% |
| 4009655 | 223.1.1.57 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › CSS-motif | 0.52 | 43.0 | 3.24e-01 | 94.8% | 44.9% |
| 5044942 | 223.1.1.14 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_4 | 0.52 | 42.0 | 3.90e-01 | 94.8% | 94.3% |
| 4958703 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.52 | 42.0 | 2.90e-01 | 94.8% | 28.1% |
| 4583308 | 304.8.1.0 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like | 0.52 | 41.0 | 3.32e-01 | 92.2% | 54.7% |
| 4026006 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.52 | 44.0 | 4.43e-01 | 100.0% | 97.5% |
| 4287644 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.51 | 42.0 | 3.94e-01 | 97.4% | 99.0% |
| 4000395 | 2007.1.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like | 0.51 | 43.0 | 3.29e-01 | 100.0% | 45.2% |
| 4955365 | 223.1.1.27 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_10 | 0.51 | 42.0 | 3.56e-01 | 93.5% | 68.1% |
| 4947810 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.51 | 43.0 | 3.82e-01 | 100.0% | 95.8% |
| 4129572 | 2011.2.1.1 ↗ | a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PNP_UDP_1 | 0.51 | 44.0 | 3.12e-01 | 100.0% | 28.9% |
| 3596871 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.50 | 40.0 | 2.63e-01 | 94.8% | 91.7% |
| 3965396 | 2003.1.1.51 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DFP | 0.50 | 36.0 | 2.70e-01 | 76.6% | 28.6% |