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LC625742.1__BCU41218.1__X__00043

Bact-Vir

LC625742.1__BCU41218.1__X__00043

Identity

Accession:
LC625742 ↗
Kingdom:
phage

Quality

91.6 mean pLDDT

Taxonomy

Bacteriophage_sp.

TaxID: 38018

Cluster

View cluster (10 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 40-111
PDB
Domain cluster: rep: KR816341.1__AKQ06885.1__X__00026__D39-114
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09682.16 best Phage_holin_6_1 55.9 7.00e-15 88.9% 62.7%
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3e3vA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.84 61.0 6.81e-01 86.1% 98.2%
3d5lA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 54.0 6.03e-01 80.6% 98.1%
4ye6A02 1.10.10.2420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.78 59.0 6.44e-01 86.1% 100.0%
2khmA01 1.10.10.1350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain 0.71 59.0 5.22e-01 93.1% 64.8%
1n81A00 1.10.3030.10 Mainly Alpha › Orthogonal Bundle › Gametocyte protein Pfg27 › Gametocyte protein Pfg27 0.70 60.0 4.48e-01 97.2% 41.4%
3vw4A01 1.10.340.50 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › 0.69 58.0 5.44e-01 97.2% 78.3%
1a41A02 1.20.120.380 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 0.68 58.0 5.33e-01 94.4% 88.3%
1x42A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.68 50.0 4.81e-01 79.2% 69.9%
6fakA02 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.68 48.0 4.67e-01 80.6% 66.7%
1hlvA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.67 51.0 5.47e-01 83.3% 100.0%
3lssA01 1.10.287.40 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain 0.67 47.0 4.10e-01 100.0% 47.3%
2f48A03 1.10.10.480 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Phosphofructokinase; domain 3 0.67 54.0 5.42e-01 91.7% 85.3%
3fy4C03 1.10.579.10 Mainly Alpha › Orthogonal Bundle › DNA Cyclobutane Dipyrimidine Photolyase, subunit A; domain 3 › DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 0.66 50.0 3.61e-01 91.7% 27.8%
4hteA01 1.20.58.1730 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.66 53.0 4.25e-01 87.5% 81.8%
3hr0B01 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.65 44.0 4.23e-01 91.7% 63.3%
3umbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.64 47.0 4.64e-01 79.2% 81.0%
5oklA01 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.63 46.0 4.18e-01 80.6% 55.4%
1ma1A01 1.10.287.990 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain 0.63 41.0 4.41e-01 93.1% 76.6%
1aisB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.63 44.0 3.98e-01 73.6% 55.6%
4l3uA00 1.20.1480.40 Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › Uncharacterised protein PF16133, DUF4844 0.62 44.0 3.70e-01 83.3% 43.9%
2xvtC00 1.10.150.510 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Receptor activity modifying family 0.62 49.0 4.83e-01 86.1% 86.1%
2ymmA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.60 47.0 4.72e-01 83.3% 90.4%
2wdqC00 1.20.1300.10 Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit 0.59 43.0 3.63e-01 77.8% 81.8%
3moiA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.59 43.0 3.22e-01 76.4% 56.0%
3kyiA00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.58 44.0 3.61e-01 80.6% 74.2%
1g2rA00 3.30.1230.10 Alpha Beta › 2-Layer Sandwich › Hypothetical Cytosolic Protein; Chain: A; › YlxR-like 0.58 49.0 4.53e-01 94.4% 77.7%
6ynwH01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.56 40.0 3.99e-01 88.9% 71.6%
4adnA01 1.20.1280.250 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.56 41.0 3.96e-01 79.2% 71.8%
6ll8A01 3.90.1640.10 Alpha Beta › Alpha-Beta Complex › inorganic pyrophosphatase (n-terminal core) › inorganic pyrophosphatase (n-terminal core) 0.56 38.0 2.84e-01 91.7% 27.4%
2v0cA04 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.56 46.0 3.56e-01 90.3% 57.9%
3eslA02 1.25.40.930 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.56 37.0 3.16e-01 93.1% 42.0%
2reoA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 49.0 3.55e-01 100.0% 76.3%
2c5uA02 1.10.3550.20 Mainly Alpha › Orthogonal Bundle › eoxyguanosinetriphosphate triphosphohydrolase fold › 0.55 45.0 3.80e-01 94.4% 69.5%
2kmfA01 1.20.58.810 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Photosystem II Pbs27 0.54 41.0 3.70e-01 81.9% 77.5%
3ungC04 1.20.120.1260 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-Cas system, Cmr2 subunit, D4 domain, six-helix bundle 0.54 42.0 3.96e-01 91.7% 81.4%
1hlbA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.54 42.0 3.36e-01 87.5% 86.6%
4oe8C00 1.10.8.1170 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.53 44.0 4.10e-01 87.5% 87.4%
3k6hA01 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.53 46.0 3.56e-01 98.6% 54.5%
1fmjA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 46.0 3.01e-01 98.6% 66.1%
2r6iA02 1.10.3580.10 Mainly Alpha › Orthogonal Bundle › ATP12-like fold › ATP12 ATPase 0.52 42.0 3.27e-01 91.7% 39.5%
3iqcA00 1.20.120.340 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS 0.52 44.0 3.72e-01 91.7% 82.4%
4id0A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.52 38.0 3.30e-01 88.9% 49.1%
4f92B10 1.10.3380.10 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › Sec63 N-terminal domain-like domain 0.52 40.0 3.34e-01 87.5% 76.2%
1j5wA02 1.20.58.180 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 0.52 46.0 4.56e-01 97.2% 89.6%
7c1iA01 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.52 41.0 3.73e-01 87.5% 82.0%
3a06B03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.52 46.0 4.32e-01 98.6% 84.1%
4gouA01 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.51 37.0 3.08e-01 80.6% 52.0%
1jqkA03 1.20.1270.30 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.51 40.0 3.02e-01 84.7% 60.6%
ECOD (56)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5082325 3705.1.1.3 ↗ alpha arrays › Bacterial chaperone lipoprotein (PulS_OutS) › Bacterial chaperone lipoprotein (PulS_OutS) › Bacterial chaperone lipoprotein (PulS_OutS) › Phage_holin_6_1 0.97 86.0 8.72e-01 91.7% 94.3%
5027755 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.85 62.0 6.01e-01 88.9% 68.8%
5045083 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.81 69.0 4.99e-01 91.7% 38.4%
185149 101.35.1.4 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.79 54.0 6.08e-01 84.7% 100.0%
3657981 198.1.1.16 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › HTH_70 0.77 68.0 6.56e-01 95.8% 87.5%
4452388 101.35.1.4 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH3 0.76 51.0 5.77e-01 77.8% 100.0%
5024540 2498.1.1.0 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" 0.75 52.0 4.10e-01 72.2% 73.1%
4271716 101.28.1.1 ↗ alpha arrays › HTH › helical bundles in FlhC-like proteins › helical bundles in FlhC-like proteins › FlhC 0.74 59.0 5.61e-01 90.3% 74.1%
4669270 6026.1.1.42 ↗ alpha duplicates or obligate multimers › cwf21 domain › cwf21 domain › cwf21 domain › CemA 0.74 51.0 4.86e-01 79.2% 61.2%
4934293 4993.1.1.0 ↗ extended segments › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit 0.74 61.0 5.92e-01 100.0% 82.5%
3961831 103.4.1.7 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › DUF1290 0.74 48.0 4.18e-01 83.3% 45.7%
4362265 101.28.1.1 ↗ alpha arrays › HTH › helical bundles in FlhC-like proteins › helical bundles in FlhC-like proteins › FlhC 0.72 62.0 5.46e-01 94.4% 76.2%
3659895 101.1.1.65 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 0.72 66.0 5.34e-01 100.0% 62.3%
3185106 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.72 55.0 5.49e-01 93.1% 78.7%
4978149 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.72 48.0 4.40e-01 91.7% 52.6%
3668680 101.1.1.65 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_4 0.71 61.0 5.52e-01 98.6% 72.0%
3538309 1128.1.1.1 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.70 40.0 3.89e-01 77.8% 51.2%
4933807 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.69 56.0 5.32e-01 93.1% 75.3%
3284352 4953.1.1.27 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › DUF3054 0.69 52.0 4.44e-01 81.9% 70.0%
5025586 101.1.6.0 ↗ alpha arrays › HTH › HTH › TrpR 0.69 55.0 5.45e-01 83.3% 89.3%
3925125 4207.1.1.60 ↗ alpha duplicates or obligate multimers › Mediator hinge subcomplex-like › Mediator hinge subcomplex-like › RNA polymerase II holoenzyme component SRB7 (MED21) › PF31020 0.67 58.0 5.11e-01 98.6% 70.0%
4972578 109.23.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › C-terminal domain in vacuolar protein sorting-associated protein 54 › C-terminal domain in vacuolar protein sorting-associated protein 54 0.67 55.0 5.01e-01 93.1% 69.7%
3610169 101.1.10.1 ↗ alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.67 54.0 3.78e-01 94.4% 27.8%
3721462 5050.1.1.0 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter 0.67 58.0 4.20e-01 100.0% 78.1%
4329065 4953.1.1.0 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.67 58.0 5.52e-01 98.6% 100.0%
None — 0.66 59.0 4.57e-01 100.0% 95.0%
3748471 4953.1.1.33 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › PF31020 0.65 55.0 4.73e-01 98.6% 68.3%
3992117 283.1.1.1 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Peptidase_M24 0.65 57.0 4.20e-01 100.0% 57.7%
3513473 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.64 48.0 3.86e-01 94.4% 39.3%
3269341 101.1.10.22 ↗ alpha arrays › HTH › HTH › Cyclin-like › ORC6 0.64 44.0 4.16e-01 72.2% 61.1%
4994765 310.2.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.64 52.0 4.74e-01 93.1% 84.0%
4939150 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.63 43.0 4.29e-01 70.8% 70.7%
3553833 5086.1.1.102 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › PTHB1_hp 0.63 48.0 3.58e-01 83.3% 85.3%
4971892 2500.1.1.0 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel 0.63 56.0 3.16e-01 98.6% 16.3%
4478129 166.1.1.1 ↗ alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C 0.63 37.0 3.49e-01 76.4% 47.8%
4943136 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.61 42.0 3.99e-01 72.2% 62.2%
4961655 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.60 42.0 3.85e-01 72.2% 58.9%
3951071 6102.1.1.1 ↗ alpha arrays › N-terminal domain of segregation and condensation protein A, ScpA › N-terminal domain of segregation and condensation protein A, ScpA › N-terminal domain of segregation and condensation protein A, ScpA › SMC_ScpA 0.60 49.0 3.88e-01 93.1% 64.4%
4624818 621.1.1.0 ↗ alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain 0.60 46.0 4.37e-01 87.5% 85.6%
3409412 101.1.10.19 ↗ alpha arrays › HTH › HTH › Cyclin-like › ORC6_2nd 0.60 42.0 3.88e-01 75.0% 61.1%
3204262 5051.1.1.15 ↗ alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › K_trans 0.59 53.0 3.36e-01 95.8% 34.4%
3374895 101.1.10.3 ↗ alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.58 45.0 3.76e-01 100.0% 46.7%
5033439 605.4.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein 0.57 36.0 3.73e-01 100.0% 67.1%
4999041 605.4.1.0 ↗ alpha duplicates or obligate multimers › ROP-like › ROP protein › ROP protein 0.55 35.0 3.42e-01 83.3% 57.5%
5060253 632.23.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Helical linker domain in nicking endonuclease N.BspD6I › Helical linker domain in nicking endonuclease N.BspD6I 0.52 35.0 3.68e-01 70.8% 76.9%
3199872 616.1.1.0 ↗ alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain 0.52 48.0 4.25e-01 100.0% 75.0%
4159500 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.52 45.0 4.28e-01 97.2% 80.0%
3883622 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.51 44.0 4.42e-01 97.2% 89.3%
3596608 1134.1.1.0 ↗ alpha bundles › C-terminal helical domain of alanine-tRNA ligase › C-terminal helical domain of alanine-tRNA ligase › Eukaryotic C-Ala helical domain 0.51 44.0 4.18e-01 95.8% 80.0%
5070523 4044.1.1.0 ↗ alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins 0.51 43.0 3.89e-01 90.3% 76.8%
224058 3630.1.1.1 ↗ alpha bundles › Nicking enzyme middle helical domain › Nicking enzyme middle helical domain › Nicking enzyme middle helical domain › NES_C_h 0.51 42.0 3.62e-01 90.3% 57.0%
3975328 3718.1.1.1 ↗ alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT › FliT 0.51 42.0 4.02e-01 91.7% 85.9%
3438493 632.15.1.5 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) › Rx_N 0.51 41.0 3.21e-01 86.1% 44.1%
4947260 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.50 44.0 4.23e-01 98.6% 85.0%
3108769 604.12.1.1 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › MIT 0.50 38.0 3.83e-01 81.9% 80.3%
3738358 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.50 44.0 4.42e-01 97.2% 93.3%