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LC644557.1__BCZ76245.1__X__00017

Bact-Vir

LC644557.1__BCZ76245.1__X__00017

Identity

Accession:
LC644557 ↗
Kingdom:
phage

Quality

92.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Rountreeviridae› Tetragenococcus_phage_phiWJ7

TaxID: 2862503

Cluster

View cluster (13 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-78
PDB
Domain cluster: representative
D2 medium residues 79-142
PDB
Domain cluster: rep: IMGVR_UViG_3300037454_000906-3300037454-Ga0394156_0000018_229251_229643__D51-122
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qqyA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.84 57.0 4.32e-01 70.3% 36.2%
4a4kA01 1.20.1500.20 Mainly Alpha › Up-down Bundle › YheA-like fold › 0.84 58.0 4.69e-01 71.9% 51.3%
2dw4A03 1.10.287.80 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ATP synthase, gamma subunit, helix hairpin domain 0.83 56.0 4.78e-01 70.3% 54.5%
1hciA04 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.81 70.0 5.67e-01 93.8% 86.8%
1h7cA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.80 57.0 4.82e-01 75.0% 92.2%
1wp7A00 1.10.287.770 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YojJ-like 0.79 53.0 5.39e-01 70.3% 70.3%
3dyjA01 1.20.1420.10 Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain 0.76 67.0 4.89e-01 96.9% 53.6%
2cazD00 6.10.140.820 Special › Helix non-globular › Helix Hairpins › 0.76 51.0 5.32e-01 70.3% 75.0%
3k3oA02 1.20.58.1360 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.76 65.0 5.94e-01 95.3% 95.2%
2pusA04 6.10.140.300 Special › Helix non-globular › Helix Hairpins › 0.76 64.0 5.31e-01 92.2% 75.0%
1ax8A00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.74 50.0 3.94e-01 70.3% 95.4%
3kkbA00 1.20.120.880 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Histidine kinase (KinB), sensor domain 0.72 62.0 5.00e-01 96.9% 61.9%
4g80T00 1.20.120.350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C 0.72 56.0 4.35e-01 84.4% 75.5%
2yevA02 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.70 47.0 4.54e-01 70.3% 67.6%
1kf6A03 1.20.58.100 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain 0.69 59.0 4.90e-01 100.0% 76.7%
1zoyA03 1.20.58.100 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain 0.67 57.0 4.75e-01 98.4% 77.8%
2jexA01 1.10.287.30 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › E2 (early) protein, N terminal domain, subdomain 1 0.65 56.0 4.84e-01 93.8% 97.9%
4wqoD00 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.64 52.0 4.09e-01 92.2% 69.5%
2n1rA00 1.10.150.90 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Immunodeficiency lentiviruses, gag gene matrix protein p17 0.63 46.0 3.65e-01 79.7% 44.8%
1uz3B00 1.10.1240.40 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › ENT domain 0.62 51.0 4.52e-01 93.8% 80.4%
1umnG00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.61 51.0 3.86e-01 93.8% 84.8%
2v6eA01 1.10.287.3180 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.61 47.0 4.55e-01 85.9% 94.7%
5xdcB01 1.10.540.10 Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.61 47.0 4.11e-01 90.6% 69.4%
5nohA00 1.20.120.1350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pneumovirus matrix protein 2 (M2), zinc-binding domain 0.60 42.0 3.61e-01 73.4% 52.4%
6de8A01 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.58 45.0 3.45e-01 93.8% 36.1%
3tklB01 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 40.0 4.14e-01 71.9% 75.8%
2imsA00 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.56 48.0 3.56e-01 95.3% 49.7%
1wgwA00 1.20.120.140 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain 0.54 41.0 3.64e-01 85.9% 83.8%
4u2vA02 1.10.437.10 Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like 0.51 37.0 3.56e-01 81.2% 71.2%
5vlcA01 3.40.50.1980 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain 0.50 41.0 3.22e-01 96.9% 79.1%
ECOD (35)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3600361 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.89 55.0 4.76e-01 70.3% 43.2%
3237155 105.2.1.0 ↗ alpha duplicates or obligate multimers › HLH-like › Dimerization domain in LRIM1/APL1C › Dimerization domain in LRIM1/APL1C 0.88 60.0 4.43e-01 70.3% 35.9%
3888162 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.86 54.0 4.28e-01 70.3% 34.2%
3761838 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.85 53.0 4.31e-01 70.3% 35.7%
5067071 604.17.1.0 ↗ alpha bundles › Spectrin repeat-like › MTH_863 C-terminal domain-like › MTH_863 C-terminal domain-like 0.81 67.0 6.76e-01 90.6% 100.0%
5018506 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.81 71.0 5.41e-01 95.3% 51.4%
3510805 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.80 71.0 5.37e-01 96.9% 42.8%
3605439 192.4.1.0 ↗ alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.79 68.0 6.61e-01 95.3% 92.9%
3712032 2004.1.1.1 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA 0.78 67.0 4.30e-01 90.6% 27.7%
3996406 604.6.1.0 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain 0.75 63.0 6.19e-01 95.3% 92.9%
3610895 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.74 63.0 4.22e-01 95.3% 27.6%
4974685 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.74 63.0 5.82e-01 96.9% 98.8%
4001455 109.4.1.1407 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › STAG, SCD, HEAT_SCC3-SA 0.73 64.0 3.65e-01 98.4% 10.4%
3662533 603.1.1.138 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › BPS1 0.73 60.0 5.45e-01 93.8% 98.9%
4942180 2006.1.4.13 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_9 0.69 53.0 4.23e-01 82.8% 56.0%
3781096 109.4.1.744 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.67 58.0 3.32e-01 100.0% 21.6%
4975820 4133.1.1.0 ↗ alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like 0.66 50.0 5.11e-01 87.5% 90.0%
3176029 192.13.1.0 ↗ alpha bundles › Long alpha-hairpin › ISY1 N-terminal domain-like › ISY1 N-terminal domain-like 0.65 48.0 4.57e-01 82.8% 67.5%
3927989 4133.1.1.1 ↗ alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › ENT 0.64 52.0 4.77e-01 93.8% 87.8%
4592728 101.11.1.1 ↗ alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.64 54.0 4.79e-01 92.2% 88.9%
3605793 604.9.1.0 ↗ alpha bundles › Spectrin repeat-like › Ribosomal protein S20 › Ribosomal protein S20 0.64 54.0 5.19e-01 95.3% 88.0%
3251818 4133.1.1.0 ↗ alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like 0.64 52.0 5.27e-01 95.3% 96.9%
3442441 604.16.1.0 ↗ alpha bundles › Spectrin repeat-like › Hypothetical membrane protein Ta0354, soluble domain › Hypothetical membrane protein Ta0354, soluble domain 0.63 52.0 4.61e-01 93.8% 80.0%
3997940 4133.1.1.1 ↗ alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › ENT 0.62 50.0 4.52e-01 93.8% 83.2%
3844081 4133.1.1.1 ↗ alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › ENT 0.62 49.0 4.44e-01 92.2% 95.8%
5082325 3705.1.1.3 ↗ alpha arrays › Bacterial chaperone lipoprotein (PulS_OutS) › Bacterial chaperone lipoprotein (PulS_OutS) › Bacterial chaperone lipoprotein (PulS_OutS) › Phage_holin_6_1 0.59 46.0 4.48e-01 84.4% 95.7%
4278700 141.1.1.2 ↗ alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › SQS_PSY 0.59 49.0 3.20e-01 93.8% 26.4%
4938319 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.56 43.0 3.54e-01 85.9% 78.4%
3717244 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 46.0 4.53e-01 92.2% 92.9%
4959128 632.18.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › hypothetical protein PA2901 › hypothetical protein PA2901 0.55 48.0 4.62e-01 98.4% 98.7%
1902251 612.1.1.4 ↗ alpha arrays › Retroviral matrix proteins › Retroviral matrix proteins › Retroviral matrix proteins › Gag_p10 0.54 41.0 3.45e-01 85.9% 50.4%
4966250 2006.1.4.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN 0.52 39.0 3.23e-01 87.5% 72.9%
3538309 1128.1.1.1 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.51 44.0 4.14e-01 96.9% 90.0%
3954639 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 40.0 3.70e-01 87.5% 88.2%
3250261 1128.1.1.1 ↗ alpha bundles › LYR protein › LYR protein › LYR protein › Complex1_LYR 0.51 44.0 3.93e-01 96.9% 82.2%