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LC644972.1__BCZ75814.1__X__00019

Bact-Vir

LC644972.1__BCZ75814.1__X__00019

Identity

Accession:
LC644972 ↗
Kingdom:
phage

Quality

79.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-57
PDB
D2 high residues 79-164
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13280.13 best WYL 47.2 2.50e-12 74.4% 78.6%
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.77 46.0 5.64e-01 84.9% 100.0%
2e70A00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.75 47.0 5.16e-01 83.7% 77.5%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.73 41.0 5.08e-01 76.7% 92.3%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 50.0 5.34e-01 84.9% 84.2%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.70 42.0 5.09e-01 87.2% 100.0%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 49.0 5.26e-01 75.6% 88.9%
4h75A00 2.80.10.70 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty 0.68 49.0 3.75e-01 80.2% 32.7%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 47.0 5.10e-01 82.6% 87.5%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 46.0 4.81e-01 80.2% 79.7%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 44.0 4.96e-01 88.4% 95.3%
4ld6A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 50.0 4.58e-01 86.0% 90.6%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 42.0 4.80e-01 70.9% 100.0%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.61 44.0 4.15e-01 80.2% 61.1%
1ohfA03 2.60.270.70 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › 0.59 47.0 3.99e-01 86.0% 56.0%
5f3yA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 43.0 4.52e-01 76.7% 88.3%
4lduA03 2.30.30.1040 Mainly Beta › Roll › SH3 type barrels. › 0.58 41.0 4.53e-01 74.4% 97.1%
1ou8A00 2.30.30.220 Mainly Beta › Roll › SH3 type barrels. › SspB-like 0.58 47.0 4.39e-01 88.4% 85.8%
3bbaA00 3.90.70.50 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Streptopain (SpeB) 0.58 44.0 3.20e-01 82.6% 94.3%
1khcA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.57 41.0 4.53e-01 75.6% 100.0%
3otpA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.57 48.0 3.66e-01 93.0% 43.3%
1wi1A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.57 48.0 4.47e-01 95.3% 92.8%
3bk5A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.56 41.0 3.05e-01 98.8% 28.5%
1dleB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 45.0 3.90e-01 89.5% 78.9%
3k6yA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.56 46.0 4.37e-01 93.0% 85.0%
2xzlA02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.55 35.0 3.66e-01 75.6% 70.9%
2d9vA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 45.0 4.24e-01 95.3% 98.1%
4gzuA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 46.0 3.84e-01 96.5% 64.7%
1ylnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 43.0 3.97e-01 90.7% 82.5%
3zpeA00 2.60.90.50 Mainly Beta › Sandwich › Adenovirus Type 5 Fiber Protein (Receptor Binding Domain) › 0.53 35.0 3.05e-01 98.8% 42.0%
5hmaA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 43.0 4.13e-01 94.2% 83.7%
3kyfA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.52 46.0 4.19e-01 100.0% 94.0%
1wqsA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 43.0 4.09e-01 94.2% 93.2%
2ia1A01 3.30.500.20 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › BH3703-like domains 0.52 40.0 3.65e-01 97.7% 61.3%
2l1tA00 2.30.110.70 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.52 44.0 4.12e-01 95.3% 89.9%
4hdoA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 43.0 4.31e-01 95.3% 94.6%
1btkA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 45.0 3.73e-01 98.8% 73.1%
1wubA00 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.52 45.0 3.64e-01 100.0% 96.0%
1mkeA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 45.0 3.86e-01 100.0% 70.1%
4ic5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 43.0 4.06e-01 93.0% 78.8%
2lw6A00 2.60.320.40 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › 0.51 29.0 3.02e-01 72.1% 56.2%
4z48A00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.51 44.0 3.29e-01 100.0% 76.2%
1bakA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 43.0 3.90e-01 94.2% 79.0%
3p06A00 3.30.230.110 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.51 38.0 3.09e-01 84.9% 62.4%
1upqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 43.0 4.09e-01 98.8% 96.3%
2ok5A02 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.51 39.0 3.04e-01 87.2% 41.1%
6j0qA02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.50 39.0 3.63e-01 82.6% 67.9%
2da0A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 43.0 3.98e-01 96.5% 78.9%
3buuB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.50 38.0 2.83e-01 80.2% 85.0%
ECOD (77)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5077969 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.87 58.0 6.02e-01 77.9% 72.5%
3290160 4.1.1.323 beta barrels › SH3 › SH3 › SH3 › WYL 0.86 59.0 6.12e-01 79.1% 75.0%
3959770 4.31.1.0 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 0.86 62.0 6.12e-01 79.1% 71.1%
3942912 4.1.1.323 beta barrels › SH3 › SH3 › SH3 › WYL 0.86 64.0 6.48e-01 81.4% 77.6%
4545520 4.7.1.7 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › WYL 0.85 62.0 6.24e-01 80.2% 75.3%
3978997 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.85 64.0 6.12e-01 81.4% 69.5%
3286662 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.85 58.0 5.48e-01 80.2% 60.0%
3593222 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.85 57.0 5.83e-01 81.4% 72.0%
3519122 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.84 62.0 6.17e-01 80.2% 73.3%
4058174 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.84 53.0 6.12e-01 81.4% 86.2%
3972550 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.83 62.0 5.85e-01 80.2% 66.0%
3279470 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.82 57.0 5.59e-01 80.2% 67.8%
3280641 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.82 61.0 5.73e-01 79.1% 66.0%
4031510 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 59.0 5.85e-01 81.4% 72.2%
4422325 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.78 61.0 6.03e-01 81.4% 88.8%
4870495 304.169.1.1 a+b two layers › Alpha-beta plaits › RspWYL1 C-terminal domain › RspWYL1 C-terminal domain › WYL 0.76 55.0 5.07e-01 80.2% 60.2%
4425420 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.75 59.0 5.94e-01 81.4% 85.9%
3511375 4.1.1.349 beta barrels › SH3 › SH3 › SH3 › ROF 0.72 53.0 5.36e-01 89.5% 77.6%
4976092 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 57.0 5.67e-01 86.0% 81.1%
5034832 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 51.0 5.67e-01 76.7% 94.3%
4625654 4.1.1.445 beta barrels › SH3 › SH3 › SH3 › Spore_GerQ 0.69 54.0 5.71e-01 97.7% 93.3%
3572423 4.1.1.12 beta barrels › SH3 › SH3 › SH3 › PWWP 0.69 55.0 4.94e-01 87.2% 66.7%
3279083 4.6.1.7 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PF26205 0.68 49.0 5.17e-01 75.6% 92.0%
3967986 4.7.1.2 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › ROF 0.68 56.0 5.84e-01 88.4% 93.8%
5080798 4.17.1.0 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like 0.68 55.0 5.86e-01 95.3% 97.3%
3429465 4.1.1.173 beta barrels › SH3 › SH3 › SH3 › DUF4216 0.68 53.0 4.38e-01 84.9% 81.3%
3828823 3324.1.1.2 extended segments › Helical arch in Ski2-like helicases › Helical arch in Ski2-like helicases › Helical arch in Ski2-like helicases 0.67 55.0 3.93e-01 90.7% 53.6%
3940233 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 52.0 4.75e-01 82.6% 65.5%
4470603 4.1.1.217 beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.66 50.0 4.09e-01 81.4% 56.4%
3482706 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 53.0 4.25e-01 87.2% 98.2%
3422852 4.1.1.85 beta barrels › SH3 › SH3 › SH3 › MTR4_beta-barrel 0.65 47.0 4.24e-01 76.7% 76.8%
3449235 4.1.1.173 beta barrels › SH3 › SH3 › SH3 › DUF4216 0.65 52.0 4.24e-01 88.4% 80.0%
3953498 4.1.1.439 beta barrels › SH3 › SH3 › SH3 › PF26205 0.65 50.0 5.31e-01 86.0% 96.0%
5073888 4.1.2.2 beta barrels › SH3 › SH3 › Stringent starvation protein B, SspB › MJ1316 0.65 51.0 5.26e-01 86.0% 91.3%
3557649 4.8.1.20 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › PWP3A-B_N 0.64 45.0 4.21e-01 81.4% 59.0%
3635435 4.18.1.1 beta barrels › SH3 › Plus3 › Plus3 › Plus-3 0.64 49.0 4.15e-01 82.6% 74.5%
3550699 4.8.1.10 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.64 49.0 4.76e-01 84.9% 74.7%
3912956 4.1.1.56 beta barrels › SH3 › SH3 › SH3 › RBB1NT 0.62 47.0 4.23e-01 83.7% 58.3%
3434219 4.25.1.2 beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD 0.62 46.0 4.47e-01 80.2% 71.6%
145843 4.1.1.12 beta barrels › SH3 › SH3 › SH3 › PWWP 0.61 44.0 4.15e-01 80.2% 61.1%
3917464 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 44.0 4.87e-01 97.7% 100.0%
4942805 4.1.1.301 beta barrels › SH3 › SH3 › SH3 › MJ1316 0.61 48.0 4.88e-01 88.4% 87.1%
3570230 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.60 45.0 4.46e-01 79.1% 77.8%
3750522 4.1.1.218 beta barrels › SH3 › SH3 › SH3 › PWP3A-B_N 0.59 45.0 4.12e-01 80.2% 91.8%
3174427 4.18.1.1 beta barrels › SH3 › Plus3 › Plus3 › Plus-3 0.59 50.0 4.15e-01 94.2% 79.4%
3342793 4.1.1.42 beta barrels › SH3 › SH3 › SH3 › Agenet 0.58 46.0 3.58e-01 86.0% 78.9%
None 0.57 45.0 3.18e-01 88.4% 93.2%
5080210 71.1.1.8 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA_like 0.57 39.0 2.97e-01 96.5% 27.7%
3524130 4.1.1.12 beta barrels › SH3 › SH3 › SH3 › PWWP 0.57 43.0 3.97e-01 80.2% 89.1%
3650249 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.56 46.0 3.42e-01 93.0% 36.3%
4929590 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 49.0 4.34e-01 98.8% 81.6%
3562058 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 47.0 4.23e-01 95.3% 79.2%
3404158 4.1.1.12 beta barrels › SH3 › SH3 › SH3 › PWWP 0.56 41.0 3.78e-01 79.1% 89.6%
3807010 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 48.0 4.14e-01 97.7% 78.6%
3734667 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 49.0 3.88e-01 98.8% 61.1%
3908519 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.55 48.0 4.23e-01 96.5% 76.0%
4028467 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.55 46.0 3.25e-01 93.0% 31.3%
4936008 1.1.7.28 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.55 38.0 3.69e-01 100.0% 65.3%
2770396 1.1.13.8 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › CoV_NSP9 0.54 39.0 3.38e-01 74.4% 66.9%
3562938 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 46.0 4.11e-01 97.7% 78.4%
3722480 2003.1.2.2 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GMC_oxred_N 0.53 42.0 2.94e-01 88.4% 67.2%
3796346 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 45.0 3.83e-01 95.3% 78.6%
3273545 4004.1.1.1 beta sandwiches › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › NAD kinase beta sandwich domain-like › YegS_C 0.53 43.0 3.44e-01 91.9% 80.4%
4338510 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.53 43.0 3.35e-01 94.2% 40.5%
4500974 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.52 47.0 4.23e-01 100.0% 85.8%
3911348 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 43.0 3.78e-01 90.7% 93.8%
3680657 4177.1.1.0 alpha duplicates or obligate multimers › BAR/IMD domain-like › BAR/IMD domain-like › BAR/IMD domain-like 0.52 44.0 2.91e-01 97.7% 27.4%
4606765 1.1.7.91 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25940 0.52 38.0 3.54e-01 79.1% 60.9%
3566291 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 44.0 3.89e-01 97.7% 87.4%
4683578 1.1.5.33 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.52 43.0 3.24e-01 93.0% 39.6%
864 9.5.1.1 beta barrels › Lipocalins/Streptavidin › Hypothetical protein TT1927B › Hypothetical protein TT1927B › YceI 0.52 45.0 3.64e-01 100.0% 96.0%
3512363 3794.1.1.1 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › PCC_BT 0.51 40.0 3.41e-01 84.9% 81.4%
3570527 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 43.0 3.85e-01 97.7% 74.6%
3494678 220.1.1.60 beta barrels › PH domain-like › PH domain-like › PH domain-like › ECT2_PH 0.51 44.0 3.27e-01 98.8% 77.9%
3752134 220.1.1.198 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_FAN 0.50 42.0 3.49e-01 98.8% 84.0%
5031715 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 43.0 3.78e-01 98.8% 76.3%
3207356 10.1.1.22 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › DUF1349 0.50 38.0 2.97e-01 82.6% 90.0%