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LC644972.1__BCZ75833.1__X__00038

Bact-Vir

LC644972.1__BCZ75833.1__X__00038

Identity

Accession:
LC644972 ↗
Kingdom:
phage

Quality

68.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Acetobacter_phage_phiAP1

TaxID: 2860312

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 83-137
PDB
Domain cluster: representative
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6h7bA01 1.10.1900.10 Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › c-terminal domain of poly(a) binding protein 0.67 52.0 4.78e-01 87.3% 75.7%
8himB01 3.90.1110.10 Alpha Beta › Alpha-Beta Complex › Dna-directed Rna Polymerase Ii 140kd Polypeptide; Chain: B; domain 3 › RNA polymerase Rpb2, domain 2 0.67 41.0 2.94e-01 100.0% 22.5%
1bhaA00 1.10.287.170 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.66 48.0 4.53e-01 78.2% 77.6%
2yksA02 1.20.58.390 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain 0.65 47.0 3.73e-01 78.2% 53.8%
3ay8A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.63 45.0 3.42e-01 76.4% 44.9%
4ib4A01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.62 50.0 3.24e-01 94.5% 91.9%
1pn9B02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.61 44.0 3.37e-01 76.4% 44.6%
3eoqB02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.60 44.0 3.11e-01 80.0% 42.1%
1tiqB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.59 45.0 3.25e-01 85.5% 88.1%
1lq7A00 1.20.1270.70 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle 0.58 46.0 4.39e-01 90.9% 100.0%
2lt3A01 1.20.58.1290 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › CarD-like, C-terminal domain 0.58 41.0 3.38e-01 74.5% 72.0%
4btfA01 1.20.930.20 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Adaptor protein Cbl, N-terminal domain 0.58 51.0 4.24e-01 100.0% 78.0%
3ei3A04 1.10.150.910 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.58 41.0 3.68e-01 78.2% 62.4%
2cfqA02 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.56 49.0 3.31e-01 100.0% 49.1%
4dwnA00 1.10.533.10 Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas 0.55 40.0 3.43e-01 81.8% 87.6%
6ks6B02 3.30.260.10 Alpha Beta › 2-Layer Sandwich › GROEL; domain 2 › TCP-1-like chaperonin intermediate domain 0.55 48.0 3.71e-01 98.2% 86.9%
2is6A04 1.10.486.10 Mainly Alpha › Orthogonal Bundle › PCRA; domain 4 › PCRA; domain 4 0.52 46.0 3.32e-01 100.0% 57.1%
6ks6A02 3.30.260.10 Alpha Beta › 2-Layer Sandwich › GROEL; domain 2 › TCP-1-like chaperonin intermediate domain 0.51 38.0 3.21e-01 87.3% 87.0%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4017674 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.71 56.0 5.09e-01 89.1% 82.7%
4016064 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.69 53.0 4.78e-01 87.3% 72.5%
3728635 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.68 51.0 4.54e-01 81.8% 63.7%
4594380 148.1.3.49 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Hda_lid 0.66 50.0 4.51e-01 85.5% 61.3%
5015200 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.65 46.0 2.86e-01 76.4% 17.5%
3593892 103.4.1.0 ↗ alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein 0.65 49.0 4.19e-01 83.6% 67.4%
3558468 2498.5.1.1 ↗ mixed a+b and a/b › Zincin-like › GroEL-intermediate domain like › GroEL-intermediate domain like › Cpn60_TCP1 0.61 46.0 3.82e-01 83.6% 88.6%
5048210 2005.1.1.39 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › WbqC 0.59 47.0 3.22e-01 90.9% 65.6%
4669173 304.9.1.89 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › MLLE 0.58 48.0 4.31e-01 98.2% 84.7%
3736340 622.1.1.7 ↗ alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › DUF7607 0.55 46.0 3.61e-01 90.9% 83.5%
4785120 192.3.1.0 ↗ alpha bundles › Long alpha-hairpin › Fe,Mn superoxide dismutase (SOD), N-terminal domain › Fe,Mn superoxide dismutase (SOD), N-terminal domain 0.54 46.0 3.81e-01 94.5% 61.2%
3443672 2498.5.1.1 ↗ mixed a+b and a/b › Zincin-like › GroEL-intermediate domain like › GroEL-intermediate domain like › Cpn60_TCP1 0.54 41.0 3.33e-01 87.3% 82.6%
4301868 2498.5.1.1 ↗ mixed a+b and a/b › Zincin-like › GroEL-intermediate domain like › GroEL-intermediate domain like › Cpn60_TCP1 0.53 40.0 3.34e-01 87.3% 84.5%
3481302 2498.5.1.0 ↗ mixed a+b and a/b › Zincin-like › GroEL-intermediate domain like › GroEL-intermediate domain like 0.53 45.0 3.60e-01 96.4% 56.4%